Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30036
(699 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 147 1e-35
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 147 1e-35
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 147 1e-35
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 141 9e-34
AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 140 2e-33
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 130 2e-30
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 147 bits (356), Expect = 1e-35
Identities = 71/104 (68%), Positives = 81/104 (77%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCY
Sbjct: 99 VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCY 158
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FPDSIAKDIEK 567
AQ +QVR IR +M +IIT +V+ +D + DSIAKDIEK
Sbjct: 159 AQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEK 202
Score = 140 bits (339), Expect = 2e-33
Identities = 67/84 (79%), Positives = 73/84 (86%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK+VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLAD
Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLAD 73
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
LQ D D ERSFRKFRLIAE VQ R
Sbjct: 74 LQKDIDPERSFRKFRLIAEDVQDR 97
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 510 LREVVNKLIS*LHCQGHREGPAMASYPLRDVWHPKVKVLKRAPFSEISKLI 662
L+++VNKL + E YPL DV+ KVKVLK+ F ++SKL+
Sbjct: 184 LKQLVNKLALDSIAKDI-EKSCQRIYPLHDVYIRKVKVLKKPRF-DVSKLL 232
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 147 bits (356), Expect = 1e-35
Identities = 71/104 (68%), Positives = 81/104 (77%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCY
Sbjct: 49 VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCY 108
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FPDSIAKDIEK 567
AQ +QVR IR +M +IIT +V+ +D + DSIAKDIEK
Sbjct: 109 AQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEK 152
Score = 58.0 bits (134), Expect = 1e-08
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +2
Query: 152 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGR 253
GRVFEVSLADLQ D D ERSFRKFRLIAE VQ R
Sbjct: 14 GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDR 47
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 510 LREVVNKLIS*LHCQGHREGPAMASYPLRDVWHPKVKVLKRAPFSEISKLI 662
L+++VNKL + E YPL DV+ KVKVLK+ F ++SKL+
Sbjct: 134 LKQLVNKLALDSIAKDI-EKSCQRIYPLHDVYIRKVKVLKKPRF-DVSKLL 182
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 147 bits (356), Expect = 1e-35
Identities = 71/104 (68%), Positives = 81/104 (77%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCY
Sbjct: 99 VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCY 158
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSDSGRW*TS*FPDSIAKDIEK 567
AQ +QVR IR +M +IIT +V+ +D + DSIAKDIEK
Sbjct: 159 AQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEK 202
Score = 140 bits (339), Expect = 2e-33
Identities = 67/84 (79%), Positives = 73/84 (86%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK+VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLAD
Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLAD 73
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
LQ D D ERSFRKFRLIAE VQ R
Sbjct: 74 LQKDIDPERSFRKFRLIAEDVQDR 97
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 510 LREVVNKLIS*LHCQGHREGPAMASYPLRDVWHPKVKVLKRAPFSEISKLI 662
L+++VNKL + E YPL DV+ KVKVLK+ F ++SKL+
Sbjct: 184 LKQLVNKLALDSIAKDI-EKSCQRIYPLHDVYIRKVKVLKKPRF-DVSKLL 232
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 141 bits (341), Expect = 9e-34
Identities = 70/105 (66%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCY
Sbjct: 100 VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCY 159
Query: 436 AQHTQVRAIRK-KMCEIITRDVTNSDSGRW*TS*FPDSIAKDIEK 567
A +QVR IR +M +IIT +V+ +D + DSIAKDIEK
Sbjct: 160 AHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAKDIEK 204
Score = 130 bits (315), Expect = 1e-30
Identities = 64/85 (75%), Positives = 70/85 (82%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLA- 178
KKG KKK+VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ KGRVFEVSL
Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVFEVSLVP 73
Query: 179 DLQADTDAERSFRKFRLIAEYVQGR 253
DLQ D D E SFRKFRLIAE VQ R
Sbjct: 74 DLQKDIDPEHSFRKFRLIAEDVQDR 98
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 510 LREVVNKLIS*LHCQGHREGPAMASYPLRDVWHPKVKVLKRAPFSEISKLI 662
L+++VNKL + E YPL DV+ KVKVLK+ F ++SKL+
Sbjct: 186 LKQLVNKLALDSIAKDI-EKSCQRIYPLHDVYIRKVKVLKKPRF-DVSKLL 234
>AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p
protein.
Length = 217
Score = 140 bits (339), Expect = 2e-33
Identities = 67/84 (79%), Positives = 73/84 (86%)
Frame = +2
Query: 2 KKGVKKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLAD 181
KKG KKK+VDPF+RKDWYDVKAP+MF RQ+G TLVNRTQG +IAS+ LKGRVFEVSLAD
Sbjct: 14 KKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLAD 73
Query: 182 LQADTDAERSFRKFRLIAEYVQGR 253
LQ D D ERSFRKFRLIAE VQ R
Sbjct: 74 LQKDIDPERSFRKFRLIAEDVQDR 97
Score = 137 bits (331), Expect = 2e-32
Identities = 62/85 (72%), Positives = 71/85 (83%)
Frame = +1
Query: 256 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 435
VLCNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCY
Sbjct: 99 VLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCY 158
Query: 436 AQHTQVRAIRKKMCEIITRDVTNSD 510
AQ +QVR IR +M +IIT +V+ +D
Sbjct: 159 AQQSQVRKIRARMTDIITNEVSGAD 183
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 130 bits (313), Expect = 2e-30
Identities = 64/97 (65%), Positives = 74/97 (76%)
Frame = +1
Query: 277 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 456
MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR
Sbjct: 1 MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60
Query: 457 AIRKKMCEIITRDVTNSDSGRW*TS*FPDSIAKDIEK 567
IR +M +IIT +V+ +D + DSIAKDIEK
Sbjct: 61 KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEK 97
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +3
Query: 510 LREVVNKLIS*LHCQGHREGPAMASYPLRDVWHPKVKVLKRAPFSEISKLI 662
L+++VNKL + E YPL DV+ KVKVLK+ F ++SKL+
Sbjct: 79 LKQLVNKLALDSIAKDI-EKSCQRIYPLHDVYIRKVKVLKKPRF-DVSKLL 127
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,312,496
Number of Sequences: 53049
Number of extensions: 740667
Number of successful extensions: 2651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2645
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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