Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30023
(770 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 40 0.003
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 40 0.003
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 36 0.048
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.11
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 34 0.15
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.45
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.78
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.0
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.0
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 30 1.8
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.8
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 30 1.8
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3) 29 5.5
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 29 5.5
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 28 7.3
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 69.7 bits (163), Expect = 2e-12
Identities = 35/72 (48%), Positives = 45/72 (62%)
Frame = +1
Query: 1 IISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSPFFKGAFSNVLRGTGGA 180
+ SYP DT+RRRMMM SG A + YK +I C I K EG KGA +N+LRG GA
Sbjct: 227 LASYPIDTIRRRMMMTSGEA---VKYKGSIDCTIQILKKEGAMSLMKGAGANILRGMAGA 283
Query: 181 FVLVLYDEIKKV 216
VL +D+ K++
Sbjct: 284 GVLAGFDKFKEL 295
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 40 MMQSGRAKSDILYKNTIHCWATIAKTEGTSPFFKGAFSNVLR 165
M+++GR D YK I C + ++EG F++G +N +R
Sbjct: 43 MLKAGRL--DHPYKGVIDCTSRTYRSEGFLSFWRGNLANCIR 82
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/53 (45%), Positives = 35/53 (66%)
Frame = +1
Query: 7 SYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSPFFKGAFSNVLR 165
+YP D VRRRM M+ RA D YK+T+H +++I K EG +KG + N+L+
Sbjct: 179 TYPLDVVRRRMQMKGIRA--DFAYKSTLHAFSSIVKLEGFRGLYKGMWPNILK 229
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 7 SYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSPFFKGAFSNVLR 165
+YP D VRRRM M+ G Y +T + I ++EG FKG + N+L+
Sbjct: 699 TYPLDVVRRRMQMERGEGM--FKYSSTWDGFKVIVRSEGFIGLFKGMWPNLLK 749
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 10 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSPFFKGAFSNVL 162
YP D V+ RM Q +++ +YKN+I C+ + + EG ++G +L
Sbjct: 932 YPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLL 982
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 35.5 bits (78), Expect = 0.048
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 4 ISYPFDTVRRRMMMQSGRAKSD--ILYKNTIHCWATIAKTEGTSPFFKGAFSNVLRG-TG 174
I P D + +M +Q RA+S I Y+N H TIA+T G ++G + ++R
Sbjct: 218 IEGPIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPA 277
Query: 175 GAFVLVLYDEIKKVL 219
F Y+ K +L
Sbjct: 278 NGFFFGFYEFTKNLL 292
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 1 IISYPFDTVRRRMM-MQSGRAKSDILYKNTIHCWATIAKTEGTSPFFKGAFSNVLRGTGG 177
++ +P DT++ R+ M + +YKN+ C+ I + EG F+G +L
Sbjct: 54 LVGFPLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSIPN 113
Query: 178 AFVL 189
VL
Sbjct: 114 TTVL 117
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 13 PFDTVRRRMMMQS---GRAKSDILYKNTIHCWATIAKTEGTSPFFKGAF 150
P + V+ RM +Q R + Y+N H TIAK EG KG F
Sbjct: 24 PLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAMQKGLF 72
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 32.3 bits (70), Expect = 0.45
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 10 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSPFFKG---AFSNVLRGTGGA 180
YP + ++ R+ +Q KS+ YK H TI + EG +KG +F + GG+
Sbjct: 171 YPCEVIKTRLTVQHVN-KSNAHYKGMRHALKTILREEGILALYKGVTPSFLGLFPFAGGS 229
Query: 181 FV 186
F+
Sbjct: 230 FL 231
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 31.5 bits (68), Expect = 0.78
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 7 SYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSPFFKGAFSNVLRG 168
++PFD ++ R+ K YK + C K EG F +G + +LRG
Sbjct: 150 TFPFDVIKSRIQADGNLGK--FRYKGMMDCALQSYKEEGMIVFTRGIWPTLLRG 201
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 4 ISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG-TSPFFKGAFSNVLRGTGG- 177
++YP D VRRRM + +G Y I+ + ++ +G ++G N LR
Sbjct: 123 LAYPLDVVRRRMQL-AGTVADGHKYSTCINTFISVYTEDGIRRGLYRGLSINYLRVCPQV 181
Query: 178 AFVLVLYDEIKKVL 219
A + +Y+ +K++L
Sbjct: 182 AVMFAVYEVVKQLL 195
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 46 QSGRAKSDILYKNTIHCWATIAKTEGTSPFFKGAFSNVLRGTGGAFVLV-LYDEIK 210
Q R D Y+ + T+ KTEG +KG + R A + + LYD++K
Sbjct: 56 QGVRTTHDAHYRGMLGTMVTLFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVK 111
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 13 PFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSPFFKGAFSNVL 162
P D ++ R+ + + R + + Y I C I EG + F+KGA ++
Sbjct: 225 PLDVIKTRLQLLN-RPQGEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMI 273
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 4 ISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG-TSPFFKGAFSNVLR 165
I+YP D VRRRM + +G Y I+ + K +G ++G N LR
Sbjct: 189 IAYPLDVVRRRMQL-AGAVPDGHKYNTCINTLVNVYKDDGIRRGLYRGLSINYLR 242
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 10 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSPFFKGAFSNVL 162
YP + ++ R+ +Q KS+ YK H TI + EG +KG + L
Sbjct: 440 YPCEVIKTRLTVQHVN-KSNAHYKGMRHALKTILREEGILALYKGVTPSFL 489
>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
Length = 321
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 191 TSTKAPPVPLRTLEKAPLKKG 129
TST++ P P +TLEKA +K G
Sbjct: 27 TSTQSHPEPYKTLEKATVKSG 47
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Frame = +1
Query: 1 IISYPFDTVRRRMMMQSGRAKSDIL------------YKNTIHCWATIAKTEGTSPFFKG 144
+I YPF+TV R+ +Q R D L Y + + C+ TI + EG F++G
Sbjct: 290 LILYPFETVLHRLYIQGTRTIIDDLDNAADVIPLSTNYFSMLDCFRTIYQQEGIFGFYRG 349
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 4 ISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSPFFKGAFSNVLRGTG-GA 180
I+ P D V+ R Q+ + I YKN H + IAK EG + G V R
Sbjct: 131 IATPTDLVKIRF--QAVKIGETIPYKNMFHAFYKIAKKEGFLGLWTGMKPTVKRAACISG 188
Query: 181 FVLVLYDEIKKVL 219
+ YD K +L
Sbjct: 189 TQIPTYDHTKHLL 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,302,563
Number of Sequences: 59808
Number of extensions: 395858
Number of successful extensions: 721
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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