BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30022 (834 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical pr... 30 2.3 Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 29 3.1 U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr... 28 9.5 AL023815-5|CAA19428.2| 366|Caenorhabditis elegans Hypothetical ... 28 9.5 >U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical protein F35C8.5 protein. Length = 300 Score = 29.9 bits (64), Expect = 2.3 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = +2 Query: 122 WYSPVWLWPMAALNLQW--DTATPL--PEVTQEASALPLSAADTELLLWWSFWIPRWPFW 289 W +W++PMA + L W DT P+ P V + S L + + +W +I W Sbjct: 98 WNQLLWIYPMALVQLIWVPDTELPILAPTVFEMLSQLAIFFLAFDFTYFWFHYINHKVKW 157 >Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical protein F33E2.6 protein. Length = 846 Score = 29.5 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -2 Query: 833 PPEVRPPKSFRPKSLRPKSTAQSPRP 756 PP PPK+ P+++RPK+ A P Sbjct: 575 PPRTEPPKTEAPRTVRPKTEAPMTVP 600 >U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein C27F2.8 protein. Length = 1715 Score = 27.9 bits (59), Expect = 9.5 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 Query: 833 PPEVRPPKSFRPKSLRPKSTAQSPRPIAPT 744 P + R P +S R + A SP PIAPT Sbjct: 1365 PSKARTPSKTPSQSNRAQHPASSPAPIAPT 1394 >AL023815-5|CAA19428.2| 366|Caenorhabditis elegans Hypothetical protein H28O16.2 protein. Length = 366 Score = 27.9 bits (59), Expect = 9.5 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +2 Query: 605 EEKTLVYVLVKKPEEQPDIIIPNSSTHFSPSKPEVYFHQISNPKGIWLV 751 EE +++KKP E+P++ H PS E +NP IW V Sbjct: 67 EESVEAQMVMKKPSEEPELKRRKILIHMEPSITE------TNPMRIWTV 109 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,801,651 Number of Sequences: 27780 Number of extensions: 288177 Number of successful extensions: 1074 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 994 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1071 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 2072006206 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -