BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30015 (660 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_01_0071 - 522920-523063,524125-524212,524289-524677 136 1e-32 03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 134 4e-32 03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 49 3e-06 11_04_0056 + 12942802-12942920,12943022-12943115 36 0.022 04_03_0232 - 13049649-13052807 33 0.20 02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 30 1.9 10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 28 7.6 07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897,346... 28 7.6 02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 7.6 >07_01_0071 - 522920-523063,524125-524212,524289-524677 Length = 206 Score = 136 bits (330), Expect = 1e-32 Identities = 68/164 (41%), Positives = 89/164 (54%) Frame = +3 Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182 G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K + FLRK Sbjct: 6 GLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRK 65 Query: 183 RCNVNPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXX 362 R N P+ GP HFRAPS+I W+TV K L G P Sbjct: 66 RMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVV 125 Query: 363 XXXXXXXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494 C +G+LS E+GW Y D +R+LE+KRK KA Sbjct: 126 PDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA 169 >03_06_0010 + 30990002-30990273,30990372-30990488,30990581-30990668, 30991505-30991648 Length = 206 Score = 134 bits (325), Expect = 4e-32 Identities = 68/158 (43%), Positives = 88/158 (55%) Frame = +3 Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200 +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K + FLRKR N P Sbjct: 12 VVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 71 Query: 201 ARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXXXXXXXX 380 + GP HFR+P+KILW+TV K L G P Sbjct: 72 SHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 131 Query: 381 XXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494 C +G+LS E+GW Y D +R+LE+KRK KA Sbjct: 132 LRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA 169 >03_06_0007 - 30975910-30975921,30976660-30976747,30976850-30976966, 30977081-30977154 Length = 96 Score = 49.2 bits (112), Expect = 3e-06 Identities = 27/92 (29%), Positives = 35/92 (38%) Frame = +3 Query: 189 NVNPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXXXX 368 N P+ GP HFR+P+KILW+TV K L P Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61 Query: 369 XXXXXXXXXXXXXCHVGRLSHEIGWKYRDVVR 464 C +G+LS E+GW Y D +R Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93 Score = 48.0 bits (109), Expect = 7e-06 Identities = 22/50 (44%), Positives = 28/50 (56%) Frame = +2 Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRK 403 RGMIPHKT+RG+ AL RL+ Y+ PP+D L+PG K Sbjct: 24 RGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHK 73 >11_04_0056 + 12942802-12942920,12943022-12943115 Length = 70 Score = 36.3 bits (80), Expect = 0.022 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +2 Query: 281 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRK 403 RG+ AL RL+ Y+G PPP+D L+PG K Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHK 49 >04_03_0232 - 13049649-13052807 Length = 1052 Score = 33.1 bits (72), Expect = 0.20 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -1 Query: 534 GDPLKFLFMALS*QPCPSSCLQAYEQHHGISIQFHGTVCLH 412 GD F++M PCPS+CL+ Y H IS+Q LH Sbjct: 753 GDAPSFIYM----WPCPSNCLKPYSAHCYISVQDEMQTNLH 789 >02_05_0024 + 25152090-25153151,25153232-25154145,25154499-25154709, 25154757-25154921 Length = 783 Score = 29.9 bits (64), Expect = 1.9 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = +1 Query: 64 QSSPRSFSKGTKLLWFAANKSIFLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFY 243 Q+SP + +L WF N ++ + LG C + T +DLS L + Y Sbjct: 567 QNSPTDNTSSERLQWFRENSTV---SELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLY 623 Query: 244 GRL 252 GRL Sbjct: 624 GRL 626 >10_08_0509 + 18419815-18422150,18422249-18422291,18423154-18423487, 18423766-18423878,18424461-18424589,18424771-18424864, 18424967-18425050,18425859-18426047,18426897-18427017, 18427476-18427692 Length = 1219 Score = 27.9 bits (59), Expect = 7.6 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 112 AANKSIFLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHL 234 A+ S+FL G HSC+RG L V+ + E HL Sbjct: 759 ASTASLFLDLLSGGKYQEYHSCIRGGIFSLCVNSEVQENHL 799 >07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897, 3463004-3463086,3463087-3463124,3463219-3464153, 3464407-3464655,3464738-3465195,3465793-3465885, 3466402-3466650 Length = 929 Score = 27.9 bits (59), Expect = 7.6 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Frame = -2 Query: 557 DTFSPASLVILLSFFSWHSL-NSLALPLVF-KLTNNITVFPSNFMGQSAYMTVIYG 396 D +SL +L+ F S+ N L L K T+ T+ P NF+ + A IYG Sbjct: 478 DAIHNSSLKVLIWFCSYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEFAMFLSIYG 533 >02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421, 26887942-26888055,26888132-26888228,26889115-26889235, 26889306-26889390,26889494-26889643,26889871-26889987, 26890123-26890221,26890439-26890495,26890581-26890664, 26890759-26890828,26891015-26891169,26891557-26892095, 26892327-26892393,26892436-26892984,26893574-26893768, 26894485-26894569,26895822-26896441,26897154-26897486, 26897552-26897616,26897868-26897955,26898250-26898331, 26898720-26898796,26899152-26899256,26899496-26899630, 26900199-26900888,26901474-26902261,26902990-26904673 Length = 2825 Score = 27.9 bits (59), Expect = 7.6 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 60 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 170 A A ++ + VVVV CE+ I+G N +KL+S Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,967,427 Number of Sequences: 37544 Number of extensions: 400328 Number of successful extensions: 1032 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1001 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1026 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1655832080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -