Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30014
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    26   0.33 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    26   0.33 
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    26   0.33 
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    26   0.33 
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    26   0.33 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    26   0.33 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    24   1.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.2  

>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 SRSPPTRRTDHHYQRQRSSLQGRDRAY 308
           SR+   + T  HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 SRSPPTRRTDHHYQRQRSSLQGRDRAY 308
           SR+   + T  HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 SRSPPTRRTDHHYQRQRSSLQGRDRAY 308
           SR+   + T  HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 SRSPPTRRTDHHYQRQRSSLQGRDRAY 308
           SR+   + T  HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 SRSPPTRRTDHHYQRQRSSLQGRDRAY 308
           SR+   + T  HY R+RS  + R+R Y
Sbjct: 208 SRTHGFQHTSSHYSRERSCSRDRNREY 234


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 SRSPPTRRTDHHYQRQRSSLQGRDRAY 308
           SR+   + T  HY R+RS  + R+R Y
Sbjct: 219 SRTHGFQHTSSHYSRERSCSRDRNREY 245


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
 Frame = +2

Query: 164 GVPQIEVTFDIDANGIL--NVSAIEKSTNKENRSPLPTTKVVSPRK---RSSVWLMRQRS 328
           GVP I +T+   A  IL  N+S   ++T K  +     T  +SP         W++   S
Sbjct: 41  GVPSIYLTY---AKNILPNNISIAGQNTYKVAKGAF--TGEISPAMLLDNGIPWVILGHS 95

Query: 329 TETRMTRQKETIQGQECIGILLASA*SATMEDEKLKEKILLNSDKQTIPRTSATSTHSSG 508
               +  + + +  ++    L +         EKL+E+    +D+    +T A +   + 
Sbjct: 96  ERRNIFGENDELIAEKVAHALESGLKVIACIGEKLEEREAGKTDEVVFRQTKAIANKINS 155

Query: 509 WD 514
           WD
Sbjct: 156 WD 157


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 48  TLITNPEYSSKYLR 89
           T I N  YSSKY+R
Sbjct: 199 TYIVNTNYSSKYMR 212



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 410 ATMEDEKLKEKILLNSDKQT 469
           A M  E+   KI +NSDK+T
Sbjct: 494 ACMNYERFTYKININSDKET 513


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 410 ATMEDEKLKEKILLNSDKQT 469
           A M  E+   KI +NSDK+T
Sbjct: 494 ACMNYERFTYKININSDKET 513


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 563 KNWEGHLTIPIINED 607
           + WE   TIP +NE+
Sbjct: 344 EGWENRATIPELNEE 358


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 165 PRGAGGIPVS 136
           PRG GG+P S
Sbjct: 399 PRGPGGVPTS 408


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 3    VTLPSPLNRLRHSPP 47
            +T PSP  R R++PP
Sbjct: 986  MTDPSPFKRGRYTPP 1000


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,528
Number of Sequences: 438
Number of extensions: 4263
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)