Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30012
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.79 
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    24   1.4  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   5.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   5.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   7.4  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 539 DLVMFLGWSHTRDTRKSLLNWFWGRYVN 456
           D V    W  T+   K  +  FW +Y N
Sbjct: 371 DEVNLTCWQDTKSANKIAMKLFWAQYTN 398


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 109 MRAFVV--LACVAMAYGRPEPPVGYSY 183
           MR FV+  +ACV++A  RPE      Y
Sbjct: 1   MRFFVIFFVACVSVALARPEDQYTIKY 27


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 665 IIPTPATHSALKN 703
           ++PTP TH  L+N
Sbjct: 158 LVPTPVTHIFLQN 170


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 37  LIGY*INYHRVS 72
           L+GY INY R+S
Sbjct: 112 LLGYSINYRRIS 123


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 462 VPPPEPVEQRLPRIPGVAPPQKHY 533
           +PPP P E     IP   P  K +
Sbjct: 213 IPPPPPEEDDDSNIPQNNPKNKQH 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,490
Number of Sequences: 336
Number of extensions: 2270
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)