Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30012
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23230.1 68414.m02906 expressed protein 34 0.080
At5g28120.1 68418.m03396 hypothetical protein 30 1.3
At3g30816.1 68416.m03949 hypothetical protein 30 1.7
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P... 30 1.7
At4g36890.1 68417.m05230 glycosyl transferase family 43 protein ... 29 2.3
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 3.0
At4g05300.1 68417.m00803 hypothetical protein 29 4.0
At3g07195.1 68416.m00858 proline-rich family protein 29 4.0
At1g21310.1 68414.m02662 proline-rich extensin-like family prote... 29 4.0
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 28 5.2
At1g51830.1 68414.m05843 leucine-rich repeat protein kinase, put... 28 5.2
At1g31310.1 68414.m03831 hydroxyproline-rich glycoprotein family... 28 5.2
At5g28110.1 68418.m03395 hypothetical protein 28 6.9
At4g21900.1 68417.m03166 MATE efflux family protein similar to r... 28 6.9
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 28 6.9
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 28 6.9
At5g39080.1 68418.m04728 transferase family protein similar to a... 27 9.2
At5g05320.1 68418.m00573 monooxygenase, putative (MO3) similar t... 27 9.2
At1g15000.1 68414.m01792 serine carboxypeptidase S10 family prot... 27 9.2
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 34.3 bits (75), Expect = 0.080
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -3
Query: 464 YVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 312
Y+N D FL + + +SA E+S++ Q AAA G S T ++S+ VS
Sbjct: 126 YINWDTFL----PSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVS 172
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -3
Query: 437 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 285
++S R STRISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSTRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 437 KRSTRVSTRISATESSITSEAQTAAAAKGESTTE--TESIRRVSAAKGNAASRK 282
K+S R STRISA+E + S KGEST T I +GN +++
Sbjct: 179 KKSVRGSTRISASEHTQGSPMDAILPIKGESTKNGVTRWITNGKVHRGNRWTKR 232
>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 938
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 434 RSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 282
+S R STRISA+E + S KGEST E+ RR KG++ +
Sbjct: 843 KSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQ 895
>At4g36890.1 68417.m05230 glycosyl transferase family 43 protein low
similarity to Galactosylgalactosylxylosylprotein
3-beta-glucuronosyltransferase 1, Homo sapiens
[SP|Q9P2W7], Rattus norvegicus [SP|O35789]; contains
Pfam domain Glycosyltransferase family 43 [PF03360]
Length = 525
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 131 PVWLWPMAALNLQWDTATPLPEVTQEASALPLSAADTELLLWW 259
P W+ +LN +PL + + PL + ++LLWW
Sbjct: 381 PEWVKDFGSLNENEGVESPLSLLKDPSMVEPLGSCGRQVLLWW 423
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 465 PPPEPVEQRLPRIPGVAPPQKHYKIIFIKGPNSSHSYCPHNSYPT 599
PP PVE P P +PP + Y+ KG N S S H PT
Sbjct: 750 PPSTPVEYHPPASPNQSPPPE-YQSPPPKGCNDSPSNDHHYQTPT 793
>At4g05300.1 68417.m00803 hypothetical protein
Length = 387
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 437 KRSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 282
++S R STRISA+E + S KGEST E+ +R KG++ +
Sbjct: 301 EKSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDQRSVRPKGDSTDNQ 354
>At3g07195.1 68416.m00858 proline-rich family protein
Length = 225
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 596 NHKTKRRHSVYVLVKKPEEQPDIIIPTP 679
N +T +R +Y ++KPE +P + P P
Sbjct: 26 NARTNKRQDLYESIEKPETKPQELAPPP 53
>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 431
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPRIPGVAPPQKHYKIIFIKGPNSS-HSYC-PHNSY 593
P +KH YV+ PP PV+ P +PP K ++ P H Y PH+ Y
Sbjct: 366 PPPKKH-YVYKSPPPPVKHYSPPPVYHSPPPPKEKYVYKSPPPPPVHHYSPPHHPY 420
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPR--IPGVAPPQKHYKIIFIKGPNSSHSYCPHNSY 593
P +KH YV+ PP PV+ P PP+KHY ++ P Y P Y
Sbjct: 86 PPPKKH-YVYKSPPPPVKHYSPPPVYHSPPPPKKHY--VYKSPPPPVKHYSPPPVY 138
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPR--IPGVAPPQKHYKIIFIKGPNSSHSYCPHNSY 593
P +KH YV+ PP PV+ P PP+KHY ++ P Y P Y
Sbjct: 114 PPPKKH-YVYKSPPPPVKHYSPPPVYHSPPPPKKHY--VYKSPPPPVKHYSPPPVY 166
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPR--IPGVAPPQKHYKIIFIKGPNSSHSYCPHNSY 593
P +KH YV+ PP PV+ P PP+KHY ++ P Y P Y
Sbjct: 142 PPPKKH-YVYKSPPPPVKHYSPPPVYHSPPPPKKHY--VYKSPPPPVKHYSPPPVY 194
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPR--IPGVAPPQKHYKIIFIKGPNSSHSYCPHNSY 593
P +KH YV+ PP PV+ P PP+KHY ++ P Y P Y
Sbjct: 170 PPPKKH-YVYKSPPPPVKHYSPPPVYHSPPPPKKHY--VYKSPPPPVKHYSPPPVY 222
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPR--IPGVAPPQKHYKIIFIKGPNSSHSYCPHNSY 593
P +KH YV+ PP PV+ P PP+KHY ++ P Y P Y
Sbjct: 198 PPPKKH-YVYKSPPPPVKHYSPPPVYHSPPPPKKHY--VYKSPPPPVKHYSPPPVY 250
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPR--IPGVAPPQKHYKIIFIKGPNSSHSYCPHNSY 593
P +KH YV+ PP PV+ P PP+KHY ++ P Y P Y
Sbjct: 226 PPPKKH-YVYKSPPPPVKHYSPPPVYHSPPPPKKHY--VYKSPPPPVKHYSPPPVY 278
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPR--IPGVAPPQKHYKIIFIKGPNSSHSYCPHNSY 593
P +KH YV+ PP PV+ P PP+KHY ++ P Y P Y
Sbjct: 254 PPPKKH-YVYKSPPPPVKHYSPPPVYHSPPPPKKHY--VYKSPPPPVKHYSPPPVY 306
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPR--IPGVAPPQKHYKIIFIKGPNSSHSYCPHNSY 593
P +KH YV+ PP PV+ P PP+KHY ++ P Y P Y
Sbjct: 282 PPPKKH-YVYKSPPPPVKHYSPPPVYHSPPPPKKHY--VYKSPPPPVKHYSPPPVY 334
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPR--IPGVAPPQKHYKIIFIKGPNSSHSYCPHNSY 593
P +KH YV+ PP PV+ P PP+KHY ++ P Y P Y
Sbjct: 310 PPPKKH-YVYKSPPPPVKHYSPPPVYHSPPPPKKHY--VYKSPPPPVKHYSPPPVY 362
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPR--IPGVAPPQKHYKIIFIKGPNSSHSYCPHNSY 593
P +KH YV+ PP PV+ P PP+KHY ++ P Y P Y
Sbjct: 338 PPPKKH-YVYKSPPPPVKHYSPPPVYHSPPPPKKHY--VYKSPPPPVKHYSPPPVY 390
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 432 PLVQKHIYVHVPPPEPVEQRLPRIPGVAP 518
P++Q Y+H PPP+P Q P P + P
Sbjct: 337 PMLQ--YYMHPPPPQPPHQDRPFYPSMDP 363
>At1g51830.1 68414.m05843 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase GI:1321686 from [Arabidopsis thaliana]
Length = 675
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 137 WLWPMAALNLQWDTATPLPEVTQEASALPLSAADTELLLWWSFWIPRWPFWRQ-HF 301
W LN+ T LP+ +A PL+A T L + W+ P PF+ HF
Sbjct: 29 WTQVTTNLNVNISTIYELPQSVMSTAATPLNANAT-LNITWTIEPPTTPFYSYIHF 83
>At1g31310.1 68414.m03831 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 383
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +3
Query: 465 PPPEPVEQRLPR---IPGVAPPQKHYK-IIFIKGPNSSHSYCPHNSYPTTKRREDTP 623
PPP P Q LPR +P PP H + I+ K ++ ++ KRR P
Sbjct: 223 PPPPPPSQPLPRPLLLPPPPPPSFHAQPILPTKDSSTDSDTSEYSDTSPAKRRRTMP 279
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 437 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 285
++S R S RISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSIRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At4g21900.1 68417.m03166 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
MatE
Length = 1094
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -3
Query: 422 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 276
VS+ IS ESS+T+ A+ AAAKG+ + ++ + A G + R T
Sbjct: 576 VSSGISPNESSVTAVAR-LAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 623
>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 595
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 450 IYVHVPPPEPVEQRLPRIPGVAPPQ 524
I H P EP++ L + PG++PP+
Sbjct: 251 IIAHTDPSEPLKWELKQKPGLSPPR 275
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -3
Query: 485 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 312
LN ++G ID+ RST + T+ S S SEA + ++TTE ESI +++
Sbjct: 689 LNSYFGTQQWIDL---ARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLN 743
>At5g39080.1 68418.m04728 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 463
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Frame = +1
Query: 67 VSSKRISLVSSKH-KMRAFV-----VLACVAMAYG-RPEPPVGYSYS 186
VSS S SSK ++ FV VL C+ A G P PVGY++S
Sbjct: 271 VSSSSSSTSSSKELRLSTFVIVYSYVLVCIIRARGGEPHRPVGYAFS 317
>At5g05320.1 68418.m00573 monooxygenase, putative (MO3) similar to
GI:3426064; identical to cDNA monooxygenase 3, partial
GI:3426065
Length = 406
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 380 EAQTAAAAKGESTTETESIRRV-SAAKGNAASRKAT*GSRMTTIATV 243
EA A KGE+ E ES RR+ K A SRK +TT TV
Sbjct: 319 EAMKAKNMKGETEDENESYRRIEDGLKKYAGSRKWRSIDLITTSYTV 365
>At1g15000.1 68414.m01792 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase precursor (SP:P32826)
[Arabidopsis thaliana]; similar to GB:AAD42963 from
[Matricaria chamomilla]
Length = 444
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +3
Query: 456 VHVPPPEPVEQRLPRIPGVAPPQKHYKIIFIKGPNSSHSYCPHNSYPTTKRREDTPYMCW 635
V V P+P P P A P K + P SS Y + + T DTP + W
Sbjct: 18 VSVESPQP-----PLFPDEALPTKSGYLPVKPAPGSSMFYAFYEAQEPTTPLPDTPLLVW 72
Query: 636 LR 641
L+
Sbjct: 73 LQ 74
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,999,598
Number of Sequences: 28952
Number of extensions: 203624
Number of successful extensions: 1110
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -