Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30011
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 87 1e-17
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 2e-14
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 56 2e-08
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 48 1e-05
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 45 6e-05
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 45 8e-05
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 44 1e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 44 2e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 41 0.001
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 41 0.001
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 40 0.002
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 39 0.004
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.004
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 38 0.007
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 38 0.012
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 38 0.012
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 37 0.015
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 37 0.020
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 37 0.020
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 36 0.027
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 36 0.027
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.027
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.036
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 35 0.083
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 33 0.25
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.25
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 33 0.25
SB_58997| Best HMM Match : PC_rep (HMM E-Value=4e-16) 32 0.58
SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 32 0.58
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.58
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 31 1.0
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 30 2.3
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 29 4.1
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 28 7.2
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_44083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 28 9.5
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/86 (46%), Positives = 56/86 (65%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
WG IVD V+MK + RS+GFGF+TY + V+E + H +D R +EPKR+VPR+E
Sbjct: 73 WGTIVDCVIMK--RDGRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIEPKRSVPRDESG 130
Query: 435 RPEASATVKKLFVAGLKQDIEEEDLE 512
PEA + +K+FV GL EED++
Sbjct: 131 APEAMSKTRKIFVGGLASTTVEEDIK 156
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 649
L++YFS +G IV ++ K G+ RGFGFV ++ D V+ V +++H
Sbjct: 66 LKDYFSQWGTIVDCVIM--KRDGRSRGFGFVTYESSDSVNEVLKKKDH 111
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Frame = +2
Query: 506 LREYFSTF------GNIVSVSVVTDKETGKK-RGFGFVEFDDYDPVDRVCLQQNHQIK 658
++EYF++ G ++ V + D++ K+ RGF FV FD+ + V++VC + H+I+
Sbjct: 155 IKEYFNSLCRKNGMGEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIR 212
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 258 GEIVDVVVMKD-PKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
GE++DV + +D KR +GF F+T+ +V++ + H+I + E K+A P+ ++
Sbjct: 169 GEVIDVDLKRDRDNPKRIRGFAFVTFDNDEIVEKVCAMKYHEIRMKQCEVKKAEPQSAMR 228
Query: 435 RPE 443
+ +
Sbjct: 229 KKD 231
Score = 35.1 bits (77), Expect = 0.062
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 172 EPEHTRKLFIGGLDYRTTDSSLKEFY 249
E E RK+FIGGL++ TT+ LK+++
Sbjct: 45 ESEKLRKIFIGGLNWNTTEEGLKDYF 70
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 145 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFY 249
P + E TRK+F+GGL T + +KE++
Sbjct: 125 PRDESGAPEAMSKTRKIFVGGLASTTVEEDIKEYF 159
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/91 (40%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQ----AHMVDEAQNNRPHKIDGRIVEPKRAVP 419
A+GE+ DVVV+ D TK+S+GFG++T++ +++ + N H+IDG+ VE KRA+P
Sbjct: 36 AYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLKDKVENGAHRIDGKEVEVKRAIP 95
Query: 420 REEIKRPEASATVKKLFVAGLKQDIEEEDLE 512
R++ T KK+FV GL +D +ED++
Sbjct: 96 RDDNSATSHEKT-KKIFVGGLPEDATKEDIQ 125
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDY 613
LREYF +G + V V+ D T K RGFG+V F DY
Sbjct: 30 LREYFEAYGELTDVVVICDSATKKSRGFGYVTFADY 65
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 267 VDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 425
VD+++ K+ +TK +GF F+ + DE + + G++VE K+A PR+
Sbjct: 139 VDLIMKKEDETKH-RGFAFVELNNEDQADELCCVKKIHVKGKMVEAKKATPRD 190
Score = 31.9 bits (69), Expect = 0.58
Identities = 13/25 (52%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKEFYE-HGE 261
KLF+GGL+ TT+ +L+E++E +GE
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGE 39
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 551 VVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIK 658
++ ++ K RGF FVE ++ D D +C + +K
Sbjct: 142 IMKKEDETKHRGFAFVELNNEDQADELCCVKKIHVK 177
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/86 (37%), Positives = 48/86 (55%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+GE+ + VVM+DP TKRS+GFGF+T+ VD N+ ++DG K+ V
Sbjct: 131 FGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDG-----KKMV------ 179
Query: 435 RPEASATVKKLFVAGLKQDIEEEDLE 512
T KK+F+ GL + EED++
Sbjct: 180 -----TTTKKIFIGGLSTNTSEEDMK 200
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 631
LR++F FG + V+ D T + RGFGF+ F D VD V
Sbjct: 124 LRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVV 165
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 184 TRKLFIGGLDYRTTDSSLKEFYEHGEKL 267
T+K+FIGGL T++ +K+++ K+
Sbjct: 182 TKKIFIGGLSTNTSEEDMKKYFSQFGKV 209
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 50.8 bits (116), Expect = 1e-06
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDGRIVEPKRAVPREE 428
+GEI V DP T+RS+GFGF+ + + ++A+N + H+I GR+ E + P+EE
Sbjct: 138 FGEIDFCEVKLDPNTRRSRGFGFVRFKKD---EDAKNVLSTSHRIQGRLCEVRLPRPKEE 194
Query: 429 IKRPEASATVKKLFVAGLKQDIEEEDL 509
+ P KKLFV L + E+ L
Sbjct: 195 LNVP------KKLFVGRLPESTTEKTL 215
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIK 658
++EYF+ FG I V D T + RGFGFV F + V L +H+I+
Sbjct: 131 MKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNV-LSTSHRIQ 180
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 50.4 bits (115), Expect = 2e-06
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Frame = +3
Query: 261 EIVDVVVMKDPKTKRSKGFGFITYSQ-AHMVDEAQNN-RPHKIDGRIVEPKRAVPREEIK 434
++ V + K P+ K S+ F F+ +S + ++D N H ID + VE KRA+PR++
Sbjct: 38 DVSSVSLAKTPEGK-SRKFCFVEFSNGSDIIDNIVFNFESHSIDNKQVEVKRAMPRDD-P 95
Query: 435 RPEASATVKKLFVAGLKQDIEEEDLES 515
A KKLF+ GLK + EED+++
Sbjct: 96 NELAHVRTKKLFIGGLKDEHSEEDVKT 122
Score = 35.1 bits (77), Expect = 0.062
Identities = 14/49 (28%), Positives = 31/49 (63%)
Frame = +3
Query: 267 VDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
+++ +++D +T + KG+ F+ + H+VD+ R ++ G+ VE K+A
Sbjct: 133 LEIKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKKA 181
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 539 VSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKRFNIWM*K 682
+ + +V D+ET K +G+ FV F + VD++ L ++ Q+K ++ M K
Sbjct: 133 LEIKMVRDRETNKFKGYCFVNFPNEHIVDKLYLVRHIQVKGKDVEMKK 180
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 48.4 bits (110), Expect = 6e-06
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Frame = +3
Query: 294 KTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPE---------- 443
+ + KGFGF+T+ ++ +PH +DG+ ++PK AVPR ++ +
Sbjct: 137 RARMLKGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRGPGQQAQTGAVMGGPQR 196
Query: 444 ASATVKKLFVAGLKQDIEEEDLE 512
SA K+F+ GL EEDL+
Sbjct: 197 GSANDGKVFIGGLAFGTTEEDLK 219
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKEFY 249
K+FIGGL + TT+ LKE++
Sbjct: 203 KVFIGGLAFGTTEEDLKEYF 222
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 503 RLREYFS-TFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIK 658
++REYF + + + +T+ + ++RGF FV FD D VD++C Q H I+
Sbjct: 118 KIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIE 170
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 631
+ L+EYFS +G +V V + D TG+ RGF FV+F D +
Sbjct: 42 KESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEADAI 86
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 425
A+ + ++ + + + R +GF F+++ VD+ + H I+G VE KRA+P+E
Sbjct: 126 AYAPVKEIEYITEHSSNRRRGFCFVSFDSEDTVDKICETQFHNIEGNKVEVKRALPKE 183
Score = 37.5 bits (83), Expect = 0.012
Identities = 27/92 (29%), Positives = 43/92 (46%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
+K +GE+V V + D T R +GF F+ + H+ + ++PK A
Sbjct: 45 LKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFK-------------HQSEADAIDPKPA 91
Query: 414 VPREEIKRPEASATVKKLFVAGLKQDIEEEDL 509
P I +P VKK+FV GLK + +E +
Sbjct: 92 AP---IGKP-PHLRVKKIFVGGLKPETSDEKI 119
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKEFY-EHGE 261
KLF+GGL Y TT SLKE++ ++GE
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGE 54
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +1
Query: 172 EPEHTR--KLFIGGLDYRTTDSSLKEFY 249
+P H R K+F+GGL T+D ++E++
Sbjct: 96 KPPHLRVKKIFVGGLKPETSDEKIREYF 123
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIK 658
LRE F+T GN+ SV ++ D++TG +GFG+V F+ D V N + K
Sbjct: 72 LRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFK 122
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 44.8 bits (101), Expect = 8e-05
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +3
Query: 276 VVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 425
++M D T+R +GFGF+T+ + D+A + + H I+ + VE K+A P+E
Sbjct: 1 MLMFDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKAQPKE 50
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 560 DKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
DK T + RGFGFV F+ + D+ C Q H I
Sbjct: 5 DKATQRHRGFGFVTFESENSADKACDTQYHLI 36
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
+++ +GEI + VV+KD TK+SKG+GF+T + + + A N+ I+GR
Sbjct: 26 LRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNKRPMIEGR 78
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIK 658
LR++F+ FG I V+ D+ T K +G+GFV D + C + I+
Sbjct: 26 LRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNKRPMIE 76
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKEFY-EHGE 261
KLF+GG+ Y + D +L++F+ + GE
Sbjct: 11 KLFVGGIPYESGDDALRKFFAQFGE 35
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
+L+E FS G ++S +V D+ETGK +G+GF E+ D +
Sbjct: 40 QLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQE 77
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +2
Query: 536 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
++SV V+TD+ETG+ RGFGFV F D +D+
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDK 65
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 EIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE 428
++VDV V+ D +T+R +GF F+T+ S+ +M D + DGR ++ +A RE+
Sbjct: 254 DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSREQ 310
Score = 37.5 bits (83), Expect = 0.012
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 264 IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPREE 428
++ V V+ D +T R +GFGF+T+ +D+A + +DGR ++ +A PR E
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGE 90
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L++ FS + ++V V V++D+ET + RGF FV F
Sbjct: 246 LQDRFSRY-DVVDVQVISDRETQRPRGFAFVTF 277
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 41.1 bits (92), Expect = 0.001
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 410
+K I G+IV + VM DP+ K SKGFGF+++ +EA N K I GR + R
Sbjct: 125 MKEICAEAGKIVSLKVMTDPEGK-SKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGR 183
Query: 411 AVPREEIKRPEASATVKK 464
A R E + E A ++K
Sbjct: 184 AKKRAE-RAAEVKAEIEK 200
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
RLRE FS +G I S V+ D + G +GFGFV F + + + N +I
Sbjct: 227 RLREEFSPYGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATKAVTEMNGRI 276
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
+++E + G IVS+ V+TD E GK +GFGFV F+
Sbjct: 124 QMKEICAEAGKIVSLKVMTDPE-GKSKGFGFVSFE 157
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 407
+G I VMKD K SKGFGF+ +S +A +++GRI+ K
Sbjct: 235 YGTISSAKVMKDDKGN-SKGFGFVCFSSPEEATKAVT----EMNGRILISK 280
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
++ F FG + SV ++ D ET + +G+GFV+F + + R Q N
Sbjct: 258 VKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMN 304
Score = 36.3 bits (80), Expect = 0.027
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 622
R L E+FS G + V +++D+ + + +G ++EF D V
Sbjct: 160 RDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAV 200
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
+K + +G + V ++ D +T RSKG+GF+ + +A A
Sbjct: 258 VKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRA 299
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+++ F T GN+ S ++ D+ TG+ G+ FV +D+ D ++ + N
Sbjct: 43 IKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMN 89
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
F FG I++ V+ D +G+ RG GFV FD
Sbjct: 133 FKPFGKIITSKVLKDV-SGEGRGTGFVRFD 161
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +2
Query: 533 NIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
++V V V+TD+ETG+ RGFGFV F + +++
Sbjct: 29 DVVDVKVITDRETGRPRGFGFVTFGSKEEMEK 60
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPREE 428
++VDV V+ D +T R +GFGF+T+ +++A + DGR ++ +A PR E
Sbjct: 29 DVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQPRGE 85
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 533 NIVSVSVVTDKETGKKRGFGFVEFD 607
N+V V V+TD+ETG+ RGFGFV +
Sbjct: 106 NVVDVRVITDRETGRPRGFGFVTLE 130
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 264 IVDVVVMKDPKTKRSKGFGFIT 329
+VDV V+ D +T R +GFGF+T
Sbjct: 107 VVDVRVITDRETGRPRGFGFVT 128
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 515 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKRFNI 670
YF +G + V ++TD+ETGK +G G V+ V+++ + H I + +
Sbjct: 338 YFRPYGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNKILEEPVHVIGKSQV 389
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
L++YF FG + SV ++ G R +GFV F D P V L+++H I
Sbjct: 96 LKDYFEQFGEVESVRIMR-TFLGYSRNYGFVLFKDDGPSKEV-LKKSHVI 143
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
RL + F FG ++S V DK+T + FGFV +D+
Sbjct: 277 RLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDN 312
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFG 592
L + F FG ++S V DK+T + FG
Sbjct: 245 LMQTFQPFGTVISAKVFIDKQTNMSKCFG 273
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIK 658
L++ FS FG ++ VS+ K G+ +GF F+EF+ + V N + K
Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFNRESK 154
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 521 STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 631
+ F + V+ D+E+G+ RGFGFV++DD + +V
Sbjct: 307 AAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKV 343
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 279 VMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKRAVPREE 428
V+ D ++ S+GFGF+ Y + + ++DGR V A PR E
Sbjct: 317 VIFDRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFASPRTE 367
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
L F FG+I V + D T K RGFGFVEF+
Sbjct: 21 LHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFE 54
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVP 419
+G+I DV + D T + +GFGF+ + A A N ++ GR + A P
Sbjct: 28 FGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAKP 83
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 37.5 bits (83), Expect = 0.012
Identities = 13/29 (44%), Positives = 23/29 (79%)
Frame = +2
Query: 542 SVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
+V+++TD+ETG+ RGFGFV F + +++
Sbjct: 124 AVNIITDRETGRPRGFGFVTFGSKEEMEK 152
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 273 VVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPR 422
V ++ D +T R +GFGF+T+ +++A + +DGR ++ A PR
Sbjct: 125 VNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPR 175
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 282 MKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 416
+KD K+ RSK +GF+ + ++A N+PH I+G+ P V
Sbjct: 94 VKDLKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQKSGPSSPV 138
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 36.7 bits (81), Expect = 0.020
Identities = 14/28 (50%), Positives = 24/28 (85%)
Frame = +2
Query: 527 FGNIVSVSVVTDKETGKKRGFGFVEFDD 610
+G IV+V++V DK+TGK++GF F+ ++D
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYED 29
Score = 34.7 bits (76), Expect = 0.083
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIV 398
+GEIV+V +++D KT + KGF F+ Y Q + N K+ GR +
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTI 50
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 36.7 bits (81), Expect = 0.020
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR--IVEPK 407
+G I D+ +++ +T +SKGFG++TY A A H IDG+ I EPK
Sbjct: 86 YGAIEDLSIIRT-QTGKSKGFGYVTYENAESAQRALAG-THIIDGKWVIAEPK 136
Score = 31.9 bits (69), Expect = 0.58
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
L F +G I +S++ +TGK +GFG+V +++ + R
Sbjct: 79 LESVFGPYGAIEDLSIIRT-QTGKSKGFGYVTYENAESAQR 118
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 36.7 bits (81), Expect = 0.020
Identities = 14/28 (50%), Positives = 24/28 (85%)
Frame = +2
Query: 527 FGNIVSVSVVTDKETGKKRGFGFVEFDD 610
+G IV+V++V DK+TGK++GF F+ ++D
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYED 29
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 368
+GEIV+V +++D KT + KGF F+ Y A +N
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDN 39
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
L + F FG ++S V DK+T + FGFV +D+
Sbjct: 293 LMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDN 327
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
R+ F +GNIV+ ++ DK TG +G GFV +D
Sbjct: 150 RKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYD 182
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 649
FS FG I+S V+ D++TG+ + F+EF+ + +R + ++
Sbjct: 140 FSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKMDN 183
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 36.3 bits (80), Expect = 0.027
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
++ F FG +V S+ + TGK +G+GF+E+++ + N
Sbjct: 215 IKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
IK + A+G++V + K+P T + KG+GFI Y ++A
Sbjct: 215 IKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDA 256
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
+R F FG I + + D K +GF FVE+D
Sbjct: 118 IRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYD 151
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 35.9 bits (79), Expect = 0.036
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 506 LREYFSTFGNIVSV-SVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 652
L + FS FG I+ ++ D +TG +GF F+ F +D D N Q
Sbjct: 116 LYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQ 165
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 512 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
E F G +V+V + D+ T +G+GFVEF
Sbjct: 31 ELFLQSGPVVNVHMPKDRITQLHQGYGFVEF 61
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 35.5 bits (78), Expect = 0.047
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
LR F +FG+I V +V D +T + +G+G+V+F
Sbjct: 69 LRSKFESFGDIEYVQIVRDHKTRENKGYGYVKF 101
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 407
++G+I V +++D KT+ +KG+G++ + ++ A N + EPK
Sbjct: 75 SFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALENCDKSLKAVWAEPK 126
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 35.5 bits (78), Expect = 0.047
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 521 STFGNIVSVSVVTDKETGKKRGFGFVEF 604
S G + +V + TDK TG++R FGFVEF
Sbjct: 478 SNAGPLENVRIPTDKNTGQQRSFGFVEF 505
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 35.1 bits (77), Expect = 0.062
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 622
+ + F FG + V ++ DKE+G+ RGFGFV D +
Sbjct: 25 IEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQI 62
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 273 VVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREE 428
V +++D ++ RS+GFGF+ A + A + + GR + A+ + E
Sbjct: 37 VDILRDKESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGGRNITVALALDKTE 89
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 34.7 bits (76), Expect = 0.083
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
++E FS +G + +V + TD+ RGF +VE+ D + ++
Sbjct: 1173 VQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEK 1213
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEP 404
G I D +M DP + +KGF F T+S DEAQ N K+D + + P
Sbjct: 176 GHIYDFRLMIDPISGLTKGFAFCTFSNK---DEAQ-NAVKKLDNKEIRP 220
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 512 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKRFNIWM*KK 685
EYFST G V +GK +GF FV + V+ V + +H I ++ M K+
Sbjct: 60 EYFSTLGEQVEHVKCIRTLSGKSKGFAFVRLRKKEAVESVLGRDDHVIDNSDVSMEKQ 117
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDG 389
GEI V + ++ KTK KG +T++ E R H I G
Sbjct: 145 GEIASVYIPENLKTKERKGHCIVTFASVTEAFEVVKKRKHHIHG 188
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 33.1 bits (72), Expect = 0.25
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 527 FGNIVSVSVVTDKETGKKRGFGFVEFD 607
+G I+S + DK+T +G+GFV+F+
Sbjct: 123 YGTIISTKAILDKDTNLCKGYGFVDFE 149
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 33.1 bits (72), Expect = 0.25
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
L F+ + + + +V DK++ K +G+GFV F D
Sbjct: 233 LTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKD 267
>SB_58997| Best HMM Match : PC_rep (HMM E-Value=4e-16)
Length = 181
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +3
Query: 576 RKGALVL*SLMIMIQLTEYACNKITKLKD 662
R+GALV S +I+IQ TE+ C+K+ K ++
Sbjct: 125 RQGALVA-SALILIQQTEHTCSKVAKFRE 152
>SB_39416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +3
Query: 576 RKGALVL*SLMIMIQLTEYACNKITKLKD 662
R+GALV S +I+IQ TE+ C+K+ K ++
Sbjct: 397 RQGALVA-SALILIQQTEHTCSKVAKFRE 424
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 31.9 bits (69), Expect = 0.58
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKRF 664
++++F FG + + + K++ + +G+ FVEF D V ++ H F
Sbjct: 114 IKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEF-ACDEVAKIAADTMHNYMMF 165
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDK--ETGKKRGFGFVEF 604
L+E FS FG + SV K +K GFGFV+F
Sbjct: 263 LKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQF 297
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 31.5 bits (68), Expect = 0.77
Identities = 10/44 (22%), Positives = 26/44 (59%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 365
+K++ +G++ D+ + +D T S+GF F+ + + ++A +
Sbjct: 32 LKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMD 75
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 148 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYE-HGE 261
S +D +P TR LF+G ++ TT LKE +E +GE
Sbjct: 236 SNYSEDEFDPGCTRTLFVGNIEKTTTYGDLKEAFERYGE 274
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 512 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
+ S +GNI + +V + TG +G+GFVE+
Sbjct: 131 DLMSPYGNIERLFLVRSEVTGDSKGYGFVEY 161
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKRFNI 670
++E FS GN+ V + G RGF FV++ + ++ N Q++ NI
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNI 277
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
+ E FS G + V +VT++ GK +G+G+VE++
Sbjct: 187 IEELFSKHGVVKQVRLVTNR-AGKPKGYGYVEYE 219
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +3
Query: 264 IVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDE--AQNNRPHKIDGRIVEPKRAVPREE 428
I D+ ++KD T S+GF F+ T +A + E A N P IDGR++ A E
Sbjct: 436 IYDIRLIKDKVTGTSRGFCFVELATIEEATQLLELIAAMNPPFMIDGRVITTLYARKSEP 495
Query: 429 IKRPEASAT 455
P +T
Sbjct: 496 SPVPTTKST 504
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 563 KETGKKRGFGFVEFDDYDPVD 625
+E K G+GFVEFDDY D
Sbjct: 32 REISMKLGYGFVEFDDYRDAD 52
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 270 DVVVMKDPKTKRSKGFGFITY 332
+V V+KDP +SKGFGF+++
Sbjct: 541 EVRVVKDPAKNKSKGFGFVSF 561
>SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 606
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 167 MKNLNTHVNFLSVDSTIEPQILH*KNSMSMGRNCRCSCNERPKNQEIKR 313
+K LNTH + + + P+ L K+ S ++ R E P NQ++ R
Sbjct: 62 LKRLNTHARYKREEPWLAPKNLSIKSVESRHQSVRTCLTELPTNQKMSR 110
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L E F+ FG + V ++ D E+GK R GFV F D + + N
Sbjct: 540 LLELFNKFGPVKDVVILRD-ESGKSRQSGFVHFWSSDVAEAANVGMN 585
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDGRIVEPK 407
+K +L ++GE+ ++KD T SKG+ F Y + D A N D +++ +
Sbjct: 689 VKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGLNGMQLGDKKLIVQR 748
Query: 408 RAV-PREEIKRPEASATV-KKLFVAGL 482
+V ++ + P+A V +L + GL
Sbjct: 749 ASVGAKQNLNNPQAMNMVPAQLQIPGL 775
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRG 586
L +FS FG + V +V D+ TG +G
Sbjct: 1082 LETFFSNFGPVADVRIVCDRRTGLNKG 1108
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 563 KETGKKRGFGFVEFDDY-DPVDRV 631
++ KRG+GFVEFDD+ D D V
Sbjct: 716 RDISLKRGYGFVEFDDHRDAEDAV 739
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 545 VSVVTDKETGKKRGFGFVEF-DDYDPVD 625
V VV D+ET + R FG+V F D+ D D
Sbjct: 5 VIVVYDRETRRSRNFGYVTFRDEQDAAD 32
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +3
Query: 270 DVVVMKDPKTKRSKGFGFITY 332
+V+V+ D +T+RS+ FG++T+
Sbjct: 4 EVIVVYDRETRRSRNFGYVTF 24
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Frame = +3
Query: 264 IVDVVVMKDPKTK-------RSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAVP 419
+ DV+++K+P+ + RS+GFGF+T++ A + K + GR ++ ++
Sbjct: 77 VTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIAPSIS 136
Query: 420 R 422
R
Sbjct: 137 R 137
>SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 399 EPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLE 512
EPKR + + R E T KK A KQD EEE+L+
Sbjct: 401 EPKRKTGKPLMFRSEPPQTRKKQQDADKKQDKEEEELK 438
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 288 DPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKRAVPREEIK 434
+P R +GFGF+T++ A ++A+ I DGR VE + + I+
Sbjct: 117 NPLNLRIEGFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQSYIR 166
>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGF 595
++ EY S G+ S++ DKETG GF
Sbjct: 41 KKADEYLSVHGDKADASIIHDKETGITTKIGF 72
>SB_44083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 384 DGRIVEPKRAVPREEIKRPEASATV 458
D R VEP ++P E+KR A +V
Sbjct: 99 DNRAVEPPESIPNSEVKRSIADGSV 123
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 425
+G + + +++D K SKG+ FIT+ + D ++N+ +++ +AV R+
Sbjct: 31 YGVVKESKIVRD-KHGVSKGYAFITFESQEVADGLRDNKGLDFKDKVLSIGQAVRRK 86
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,875,911
Number of Sequences: 59808
Number of extensions: 392565
Number of successful extensions: 1124
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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