Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30011
(766 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 68 8e-12
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 66 2e-11
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 65 4e-11
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 65 4e-11
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 65 6e-11
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 65 6e-11
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 62 4e-10
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 62 4e-10
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 62 4e-10
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 62 5e-10
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 61 9e-10
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 61 9e-10
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 60 2e-09
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 60 2e-09
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 59 3e-09
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 56 2e-08
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 53 2e-07
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 51 7e-07
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 51 7e-07
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 51 7e-07
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 50 2e-06
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 50 2e-06
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 50 2e-06
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 50 2e-06
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 49 3e-06
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 49 4e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 48 9e-06
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 47 1e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 47 2e-05
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 46 4e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 46 4e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 46 4e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 45 5e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 45 5e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 45 6e-05
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 45 6e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 44 8e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 44 8e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 44 8e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 44 8e-05
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 44 8e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 44 8e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 44 8e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 1e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 44 1e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 43 3e-04
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 43 3e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 42 3e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 42 3e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 42 4e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 42 6e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 42 6e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 41 0.001
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 40 0.001
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 40 0.001
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 40 0.001
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 40 0.001
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.001
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 40 0.001
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 40 0.001
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 40 0.001
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 40 0.002
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 40 0.002
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 39 0.003
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 39 0.003
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.003
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 39 0.003
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 39 0.003
At5g51300.2 68418.m06360 splicing factor-related contains simila... 39 0.004
At5g51300.1 68418.m06359 splicing factor-related contains simila... 39 0.004
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 39 0.004
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 39 0.004
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.004
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.004
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 38 0.006
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 38 0.006
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 38 0.006
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 38 0.006
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 38 0.006
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 38 0.007
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 38 0.007
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 38 0.007
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.010
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.010
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 38 0.010
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 38 0.010
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 38 0.010
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 38 0.010
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 37 0.013
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 37 0.013
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 37 0.013
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 37 0.013
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 37 0.013
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 37 0.013
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.017
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 37 0.017
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 36 0.022
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 36 0.022
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 36 0.022
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 36 0.039
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 36 0.039
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 36 0.039
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 36 0.039
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.039
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.039
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 36 0.039
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 36 0.039
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.052
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.052
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 35 0.052
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 35 0.052
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 35 0.052
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 35 0.052
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 35 0.052
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 35 0.068
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 35 0.068
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 35 0.068
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.068
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 35 0.068
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 35 0.068
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.068
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 34 0.090
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.12
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 33 0.16
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 33 0.16
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 33 0.16
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 33 0.16
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 33 0.16
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 33 0.21
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 33 0.28
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 32 0.36
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 32 0.36
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 32 0.36
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 32 0.48
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 32 0.48
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 31 0.64
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 31 0.64
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 31 0.64
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 31 0.84
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 31 0.84
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 31 0.84
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi... 31 0.84
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 31 0.84
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 31 0.84
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 1.1
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 31 1.1
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 30 1.5
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 30 1.5
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ... 30 1.5
At2g47310.1 68415.m05906 flowering time control protein-related ... 30 1.5
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 30 1.5
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 29 2.6
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 29 3.4
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 29 3.4
At1g41855.1 68414.m04833 hypothetical protein 29 3.4
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 29 4.5
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 29 4.5
At4g38440.1 68417.m05432 expressed protein 28 5.9
At4g30150.1 68417.m04287 expressed protein 28 5.9
At1g56660.1 68414.m06516 expressed protein 28 5.9
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 5.9
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 5.9
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 5.9
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 7.8
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 7.8
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 28 7.8
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 67.7 bits (158), Expect = 8e-12
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREEI 431
+GEI D V+MKD KT + +GFGF+TY+ + +VD+ Q+N H I G+ VE KR +PR +
Sbjct: 65 YGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN--HIIIGKQVEIKRTIPRGSM 122
Query: 432 KRPEASATVKKLFVAGLKQDIEEEDLE 512
+ KK+FV G+ +++++ +
Sbjct: 123 SSNDFK--TKKIFVGGIPSSVDDDEFK 147
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRIVEPKRAVPREE 428
+GE+ + +M+D T RS+GFGF+TY MVD A+ NR ++ G VE K+A P
Sbjct: 153 FGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNR-IELSGTQVEIKKAEP--- 208
Query: 429 IKRPEASATVKKLF 470
K+P + T K F
Sbjct: 209 -KKPNSVTTPSKRF 221
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +2
Query: 512 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
++F +G I ++ D++TG+ RGFGFV + D VD+V +Q NH I
Sbjct: 60 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV-IQDNHII 106
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+E+F FG + ++ D TG+ RGFGFV ++ D VD + + N
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGN 192
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/94 (35%), Positives = 54/94 (57%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
+K + +G++ D +VMKD T RS+GFG++T++ A A H + RI+E K A
Sbjct: 19 LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE-HFLGNRILEVKVA 77
Query: 414 VPREEIKRPEASATVKKLFVAGLKQDIEEEDLES 515
P+EE+++P T ++FVA + + E D S
Sbjct: 78 TPKEEMRQPAKKVT--RIFVARIPSSVSESDFRS 109
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+GEI D+ + KD +K+ +G GFIT+S A V++ + H + G V RA P+E+
Sbjct: 114 YGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED-THDLGGTTVAVDRATPKEDDH 172
Query: 435 RP 440
P
Sbjct: 173 PP 174
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+G I D + KDPK +GFGF+T+++ + D R H+I G+ V A P +E
Sbjct: 263 FGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-RRSHEICGQEVAIDSATPLDE-A 320
Query: 435 RPEASAT 455
P A A+
Sbjct: 321 GPSAGAS 327
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
LR+YF FG+I + D + RGFGFV F + DRV +++H+I
Sbjct: 256 LRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-RRSHEI 304
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L++Y S FG++ V+ D+ TG+ RGFG+V F
Sbjct: 19 LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTF 51
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 65.3 bits (152), Expect = 4e-11
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
+K ++GE+++ V++KD T R++GFGF+ ++ V E H IDGR+VE K+A
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKA 80
Query: 414 VPREE---IKRPEASA---------TVKKLFVAGLKQDIEEEDLES 515
VPR++ + R +S+ +K+FV GL + E D ++
Sbjct: 81 VPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/65 (44%), Positives = 40/65 (61%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+G DVVVM D T+R +GFGFITY V++ H+++G++VE KRAVP+E
Sbjct: 131 FGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSP 190
Query: 435 RPEAS 449
P S
Sbjct: 191 GPSRS 195
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
RL+EYFS+FG ++ ++ D+ TG+ RGFGFV F D V + + + H I
Sbjct: 21 RLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD-PAVAEIVITEKHNI 70
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+ YF FG V V+ D T + RGFGF+ +D + V++V L+ H++
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHEL 173
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 175 PEHTRKLFIGGLDYRTTDSSLKEFYE 252
P TRK+F+GGL T+S K ++E
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFE 129
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKEFY 249
KLFIGG+ + T + LKE++
Sbjct: 7 KLFIGGISWDTNEERLKEYF 26
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 65.3 bits (152), Expect = 4e-11
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
+K ++GE+++ V++KD T R++GFGF+ ++ V E H IDGR+VE K+A
Sbjct: 22 LKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKA 80
Query: 414 VPREE---IKRPEASA---------TVKKLFVAGLKQDIEEEDLES 515
VPR++ + R +S+ +K+FV GL + E D ++
Sbjct: 81 VPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/65 (44%), Positives = 40/65 (61%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+G DVVVM D T+R +GFGFITY V++ H+++G++VE KRAVP+E
Sbjct: 131 FGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSP 190
Query: 435 RPEAS 449
P S
Sbjct: 191 GPSRS 195
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
RL+EYFS+FG ++ ++ D+ TG+ RGFGFV F D V + + + H I
Sbjct: 21 RLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD-PAVAEIVITEKHNI 70
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+ YF FG V V+ D T + RGFGF+ +D + V++V L+ H++
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHEL 173
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 175 PEHTRKLFIGGLDYRTTDSSLKEFYE 252
P TRK+F+GGL T+S K ++E
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFE 129
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKEFY 249
KLFIGG+ + T + LKE++
Sbjct: 7 KLFIGGISWDTNEERLKEYF 26
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 64.9 bits (151), Expect = 6e-11
Identities = 31/86 (36%), Positives = 51/86 (59%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+GEI D V+M+D T + +GFGFIT++ +VD+ + H I+G+ VE KR +P+
Sbjct: 42 YGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIPKGAGG 100
Query: 435 RPEASATVKKLFVAGLKQDIEEEDLE 512
KK+FV G+ + E++L+
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELK 126
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L+++F+ +GN+V V+ D ET + RGFGFV FD + VD + + N
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE--AQNNRPHKIDGRIVEPKRAVPREE 428
+G +V+ V++D +T RS+GFGF+ + +VDE ++ N D + VE K+A P++
Sbjct: 132 YGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQ-VEIKKAEPKKS 190
Query: 429 IKRPEAS 449
+ R S
Sbjct: 191 LNRSPPS 197
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +2
Query: 512 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
++F +G I ++ D+ TG+ RGFGF+ F D VD+V ++ H I
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV-IEDTHVI 83
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 145 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFY 249
P +G + + T+K+F+GG+ T+ LK+F+
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFF 129
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 64.9 bits (151), Expect = 6e-11
Identities = 31/86 (36%), Positives = 51/86 (59%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+GEI D V+M+D T + +GFGFIT++ +VD+ + H I+G+ VE KR +P+
Sbjct: 42 YGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED-THVINGKQVEIKRTIPKGAGG 100
Query: 435 RPEASATVKKLFVAGLKQDIEEEDLE 512
KK+FV G+ + E++L+
Sbjct: 101 NQSKDIKTKKIFVGGIPSTVTEDELK 126
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L+++F+ +GN+V V+ D ET + RGFGFV FD + VD + + N
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +2
Query: 512 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
++F +G I ++ D+ TG+ RGFGF+ F D VD+V ++ H I
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV-IEDTHVI 83
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 356
+G +V+ V++D +T RS+GFGF+ + +VDE
Sbjct: 132 YGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDE 165
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 145 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFY 249
P +G + + T+K+F+GG+ T+ LK+F+
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFF 129
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/57 (49%), Positives = 39/57 (68%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 425
+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAVP+E
Sbjct: 133 FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE 189
Score = 60.1 bits (139), Expect = 2e-09
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE-- 428
+G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+AVPR++
Sbjct: 29 YGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKAVPRDDQQ 87
Query: 429 -IKRPEA-----------SATVKKLFVAGLKQDIEEEDLES 515
+KR + KK+FV GL I EE+ ++
Sbjct: 88 VLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKN 128
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
RLR+YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + ++
Sbjct: 21 RLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKH 68
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+ YF FG I V V+ D T + RGFGF+ FD D VDRV + H++
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHEL 175
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/57 (49%), Positives = 39/57 (68%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 425
+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAVP+E
Sbjct: 133 FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE 189
Score = 60.1 bits (139), Expect = 2e-09
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE-- 428
+G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+AVPR++
Sbjct: 29 YGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKAVPRDDQQ 87
Query: 429 -IKRPEA-----------SATVKKLFVAGLKQDIEEEDLES 515
+KR + KK+FV GL I EE+ ++
Sbjct: 88 VLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKN 128
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
RLR+YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + ++
Sbjct: 21 RLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKH 68
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+ YF FG I V V+ D T + RGFGF+ FD D VDRV + H++
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHEL 175
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 62.1 bits (144), Expect = 4e-10
Identities = 28/57 (49%), Positives = 39/57 (68%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 425
+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAVP+E
Sbjct: 133 FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKE 189
Score = 60.1 bits (139), Expect = 2e-09
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE-- 428
+G++V+ V+M+D T R++GFGFI ++ V E H IDGR VE K+AVPR++
Sbjct: 29 YGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIMDKHIIDGRTVEAKKAVPRDDQQ 87
Query: 429 -IKRPEA-----------SATVKKLFVAGLKQDIEEEDLES 515
+KR + KK+FV GL I EE+ ++
Sbjct: 88 VLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKN 128
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
RLR+YFS +G++V ++ D+ TG+ RGFGF+ F D +RV + ++
Sbjct: 21 RLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKH 68
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+ YF FG I V V+ D T + RGFGF+ FD D VDRV + H++
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHEL 175
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/57 (49%), Positives = 39/57 (68%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 425
+G I DVVVM D T+R +GFGFIT+ VD + H+++G++VE KRAVP+E
Sbjct: 145 FGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKE 201
Score = 57.6 bits (133), Expect = 8e-09
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 17/104 (16%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE-- 428
+G++V+ V+M+D T R++GFGFI ++ + + ++ H IDGR VE K+AVPR++
Sbjct: 38 YGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK-HIIDGRTVEAKKAVPRDDQQ 96
Query: 429 -IKR---------PE-----ASATVKKLFVAGLKQDIEEEDLES 515
+KR P A KK+FV GL I E + ++
Sbjct: 97 VLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKN 140
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/48 (39%), Positives = 32/48 (66%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
RL+EYF +G++V ++ D+ TG+ RGFGF+ F D +RV + ++
Sbjct: 30 RLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKH 77
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+ YF FG I V V+ D T + RGFGF+ FD + VD V + H++
Sbjct: 139 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHEL 187
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 10/97 (10%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE- 428
++GE+++ V+MKD T R++GFGF+ ++ ++ + + H IDG+IVE K+AVPR++
Sbjct: 28 SFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEAKKAVPRDDH 86
Query: 429 ---------IKRPEASATVKKLFVAGLKQDIEEEDLE 512
++ + KK+FV GL + E + +
Sbjct: 87 VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFK 123
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +3
Query: 237 KRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 416
K+ +G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182
Query: 417 PRE 425
P++
Sbjct: 183 PKD 185
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 637
RLR+YF +FG ++ ++ D+ TG+ RGFGFV F D + +RV L
Sbjct: 21 RLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL 65
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
++YF+ FG I V V+ D T + RGFGF+ +D + VD+V + H++
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHEL 171
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKE-FYEHGEKL 267
KLFIGG+ + T++ L++ F+ GE L
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVL 33
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 10/97 (10%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE- 428
++GE+++ V+MKD T R++GFGF+ ++ ++ + + H IDG+IVE K+AVPR++
Sbjct: 28 SFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK-HIIDGKIVEAKKAVPRDDH 86
Query: 429 ---------IKRPEASATVKKLFVAGLKQDIEEEDLE 512
++ + KK+FV GL + E + +
Sbjct: 87 VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFK 123
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +3
Query: 237 KRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 416
K+ +G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182
Query: 417 PRE 425
P++
Sbjct: 183 PKD 185
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 637
RLR+YF +FG ++ ++ D+ TG+ RGFGFV F D + +RV L
Sbjct: 21 RLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL 65
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
++YF+ FG I V V+ D T + RGFGF+ +D + VD+V + H++
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHEL 171
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKE-FYEHGEKL 267
KLFIGG+ + T++ L++ F+ GE L
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVL 33
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
LREYFS FG ++ V+V+ +K TG+ RGFGFV F D +DRV LQ H I
Sbjct: 22 LREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV-LQDKHHI 70
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/58 (41%), Positives = 38/58 (65%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE 428
+GE++ V VM++ T R +GFGF+ +S ++D ++ H ID R V+ KRA+ REE
Sbjct: 29 FGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK-HHIDNRDVDVKRAMSREE 85
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 425
+G + D V+M D T+R +GFGF+++ VD + H ++G+ VE KRA+P++
Sbjct: 133 YGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKD 189
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
R YF T+G + ++ D+ T + RGFGFV FD D VD V + H +
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDL 175
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPR-EEI 431
+GE+VD V+M D T +GFGF+T++ + V E H ID R V+ KR +PR ++
Sbjct: 89 FGEVVDSVIMTDRITGNPRGFGFVTFADS-AVAEKVLEEDHVIDDRKVDLKRTLPRGDKD 147
Query: 432 KRPEASATVKKLFVAGLKQDIEEEDLES 515
+A + +K+FV GL +EE++L++
Sbjct: 148 TDIKAVSKTRKIFVGGLPPLLEEDELKN 175
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 631
L+ YF +G+I+ ++ D TG+ RGFGFV F D VDR+
Sbjct: 173 LKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRL 214
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 410
+K +G+I++ +M D T RS+GFGF+T+ VD + + H++ + VE KR
Sbjct: 173 LKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKR 232
Query: 411 AVPR 422
A P+
Sbjct: 233 AEPK 236
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +2
Query: 515 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
YF FG +V ++TD+ TG RGFGFV F D ++V L+++H I
Sbjct: 85 YFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKV-LEEDHVI 130
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +3
Query: 237 KRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAV 416
K+ +G I DVVVM D +T+R +GFGFI+Y VD+ H+++G++VE K AV
Sbjct: 50 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 109
Query: 417 PRE 425
P++
Sbjct: 110 PKD 112
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
++YF+ FG I V V+ D T + RGFGF+ +D + VD+V + H++
Sbjct: 50 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHEL 98
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/66 (39%), Positives = 38/66 (57%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+G DVVVM D T R +GFGF+TY V+ + H++ + VE KRA+P+E I+
Sbjct: 143 FGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQ 202
Query: 435 RPEASA 452
+A
Sbjct: 203 SNNGNA 208
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYDPV 622
L++YFS +G ++ V +K TGK RGFGFV F +D D V
Sbjct: 22 LKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+ YF FG V V+ D T + RGFGFV +D D V+ V H++
Sbjct: 137 KSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHEL 185
Score = 35.9 bits (79), Expect = 0.030
Identities = 18/66 (27%), Positives = 39/66 (59%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
+K+ +G +++ VV K+ T + +GFGF+ ++ V +A + H I G+ V+ ++A
Sbjct: 22 LKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD-THFILGKPVDVRKA 80
Query: 414 VPREEI 431
+ + E+
Sbjct: 81 IRKHEL 86
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 184 TRKLFIGGLDYRTTDSSLKEFYE 252
T+K+F+GGL TT+ K ++E
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFE 141
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+LRE+F+ +G + V+ DK TG+ RGFGFV F D +DRV LQ+ H I
Sbjct: 21 KLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV-LQEKHSI 70
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 425
+G + DV +M D T R +GFGF+++ VD + H + G+ VE KRA+P++
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE 428
+GE+ +VM+D T R +GFGF+ +S ++D + H ID R V+ KRA+ REE
Sbjct: 29 YGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK-HSIDTREVDVKRAMSREE 85
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 509 REYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
R+YF +G + V+++ D+ T + RGFGFV FD D VD V + H +
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDL 175
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 133 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYE 252
LN S GD Y + T+K+F+GGL TD ++++E
Sbjct: 95 LNTSRSSGGDAYNK---TKKIFVGGLPPTLTDEEFRQYFE 131
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
R +R YF FG IV V+TDK TG+ +G+GFV F + + R C N
Sbjct: 35 RDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/72 (37%), Positives = 37/72 (51%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
++R +GEIV+ VV+ D T RSKG+GF+T+ +A A N IDGR A
Sbjct: 38 MRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLA 97
Query: 414 VPREEIKRPEAS 449
+ RP S
Sbjct: 98 CLGAQKPRPPTS 109
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 51.2 bits (117), Expect = 7e-07
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 637
LR YF FG+IV V+TDK +G+ +G+GFV F D + + C+
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 222 HRFFIKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
H+ ++ +G+IV+ VV+ D + RSKG+GF+T+ +A + IDGR
Sbjct: 19 HKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 51.2 bits (117), Expect = 7e-07
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 637
LR YF FG+IV V+TDK +G+ +G+GFV F D + + C+
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACV 66
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 222 HRFFIKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
H+ ++ +G+IV+ VV+ D + RSKG+GF+T+ +A + IDGR
Sbjct: 19 HKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGR 75
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+R YF FG I+ ++TDK TGK +G+GFV F D D R N
Sbjct: 33 MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPN 79
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
++R +GEI++ V++ D T +SKG+GF+T+ + A + IDGR
Sbjct: 33 MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+R YF FG I+ ++TDK TGK +G+GFV F + D R N
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
++R +GEI++ V++ D T +SKG+GF+T+ ++ A + IDGR
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+R YF FG I+ ++TDK TGK +G+GFV F + D R N
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
++R +GEI++ V++ D T +SKG+GF+T+ ++ A + IDGR
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
LR+ F+ FG++V V+ D+ETG+ RGFGFV F+D
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85
Score = 34.7 bits (76), Expect = 0.068
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAVPREEI 431
+G++VD V+ D +T RS+GFGF+ ++ A + K ++GR + A R
Sbjct: 58 FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 117
Query: 432 KR 437
R
Sbjct: 118 PR 119
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKEFYEH 255
KLFIGGL + T D+SL++ + H
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
LR+ F+ FG++V V+ D+ETG+ RGFGFV F+D
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85
Score = 34.7 bits (76), Expect = 0.068
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAVPREEI 431
+G++VD V+ D +T RS+GFGF+ ++ A + K ++GR + A R
Sbjct: 58 FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 117
Query: 432 KR 437
R
Sbjct: 118 PR 119
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKEFYEH 255
KLFIGGL + T D+SL++ + H
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/53 (47%), Positives = 31/53 (58%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
+GEIV V+ D T+RSKGFGF+T+ + A N H IDGR V K A
Sbjct: 32 FGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/50 (44%), Positives = 26/50 (52%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
L YF FG IV VV D T + +GFGFV F + + R C NH I
Sbjct: 25 LISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTI 74
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 49.2 bits (112), Expect = 3e-06
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 637
LR +F +G+I+ V+TDK TG+ +G+GFV F D + R C+
Sbjct: 40 LRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACV 83
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
++R +G+I++ VV+ D T RSKG+GF+T+ A + IDGR
Sbjct: 40 LRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGR 92
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIK 658
L +F FG I+ V+VV D+ET + +G+GFV F D + R C N I+
Sbjct: 29 LINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIE 79
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+GEI+ V V+ D +T RS+G+GF+T+ A A + I+GRI K A ++K
Sbjct: 36 FGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLAFVGAKVK 95
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
R LR+ F +G++V VV DK +G+ RGFGF+ FD+ +D N
Sbjct: 21 RGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPRE 425
+G +V+ V+ D + RS+GFGFIT+ + +DEA +DGR + +A P +
Sbjct: 30 YGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQ 87
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 169 EEPEHTRKLFIGGLDYRTTDSSLKEFYE 252
E+PE+ + FIGGL + T+D L++ +E
Sbjct: 3 EDPEY--RCFIGGLAWTTSDRGLRDAFE 28
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 634
LR++F +G I+ V+ DK TG+ +G+GFV F D + R C
Sbjct: 40 LRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
+GEI++ VV+ D T RSKG+GF+T+ A + IDGR
Sbjct: 47 YGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGR 92
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 625
RL + FS G +V VV D+ETG+ RGFGFV D D ++
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +3
Query: 261 EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREEIKR 437
EI +V+ ++ T +S+GFGF+T S + A + + ++GR++ +A PR R
Sbjct: 177 EIAEVIYNRE--TDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRG--SR 232
Query: 438 PEASATVK----KLFVAGLKQDIEEEDLE 512
PE + V +++V L D++ LE
Sbjct: 233 PERAPRVYEPAFRVYVGNLPWDVDNGRLE 261
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
G++V+ V+ D +T RS+GFGF+T S ++EA
Sbjct: 268 GKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 625
F G + V+ ++ET + RGFGFV D +
Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
LRE F+ +G +V V+ D+ETG+ RGFGFV F
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPR 422
+GE+VD V+ D +T RS+GFGF+T++ + A Q + GR+V+ A R
Sbjct: 63 YGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKE-FYEHGE 261
KLFIGG+ Y + SL+E F ++GE
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGE 65
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
L++ F++FG + +V+ D+ETG+ RGFGFV F D
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/53 (32%), Positives = 35/53 (66%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
+K+ ++GE+ + V+ D +T RS+GFGF+++S +++ NN ++DG+
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKE-FYEHGE 261
KLF+GGL + T DSSLK+ F GE
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGE 60
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
L++ F++FG + +V+ D+ETG+ RGFGFV F D
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/53 (32%), Positives = 35/53 (66%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
+K+ ++GE+ + V+ D +T RS+GFGF+++S +++ NN ++DG+
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANNAIKEMDGK 99
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKE-FYEHGE 261
KLF+GGL + T DSSLK+ F GE
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGE 60
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 625
RL FS G +V VV+D+ETG+ RGFGFV+ + + V+
Sbjct: 222 RLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +3
Query: 261 EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPR--EEI 431
EI +V+ +D T +S+GFGF+T S ++A + +++GR + RA PR
Sbjct: 140 EISEVIYNRD--TDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE 197
Query: 432 KRPEASATVKKLFVAGLKQDIEEEDLE 512
++P +++V L D++ LE
Sbjct: 198 RQPRVYDAAFRIYVGNLPWDVDSGRLE 224
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
++R+ G++VD V+ D +T RS+GFGF+ S + V+ A
Sbjct: 223 LERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPK 407
+G +VD +VM+D T RS+GFGF+TYS + A + K ++GR V K
Sbjct: 26 YGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVK 77
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 625
LRE FS +GN+V V+ D+ T + RGFGFV + + +
Sbjct: 19 LREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAE 58
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
LRE FS +G +V ++ D+ETG+ RGF FV F
Sbjct: 50 LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTF 82
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 228 FFIKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 407
F ++ +GE+VD ++ D +T RS+GF F+T++ A + GR +
Sbjct: 48 FGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVN 107
Query: 408 RAVPR 422
A R
Sbjct: 108 YATER 112
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 398
+K ++G+IVD VV+ D ++ S+GFGF+TY + + A +K +DGRI+
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRII 107
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
L+E F +FG IV VV D+E+G RGFGFV +D +
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIE 88
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 44.4 bits (100), Expect = 8e-05
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
L+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 34.3 bits (75), Expect = 0.090
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
++R +G+++D ++ D ++ RS+GFGF+T+ + +A
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 44.4 bits (100), Expect = 8e-05
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
L+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 410
++R +G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 411 AVPR 422
A R
Sbjct: 82 AQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 44.4 bits (100), Expect = 8e-05
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
L+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 410
++R +G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 411 AVPR 422
A R
Sbjct: 82 AQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 44.4 bits (100), Expect = 8e-05
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
L+ FS FG+++ ++ D+E+G+ RGFGFV F D
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD 56
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKR 410
++R +G+++D ++ D ++ RS+GFGF+T+ + M D + ++DGR++
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 411 AVPR 422
A R
Sbjct: 82 AQSR 85
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 44.4 bits (100), Expect = 8e-05
Identities = 15/48 (31%), Positives = 32/48 (66%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+L++ F++FG +V V+TD+++G+ +GFGFV + + ++ + N
Sbjct: 49 KLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMN 96
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAVPREE 428
++G++VD V+ D + RSKGFGF+TY+ ++A+ K +DG ++ A PRE
Sbjct: 56 SFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP 115
Query: 429 IKRP 440
+RP
Sbjct: 116 -RRP 118
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 44.4 bits (100), Expect = 8e-05
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
R L F+ +G+++ ++ D+ETG+ RGFGFV F D
Sbjct: 22 RALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 422
+G+++D ++ D +T RS+GFGF+T+ + M D + +DGR + A R
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 44.4 bits (100), Expect = 8e-05
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
R L F+ +G+++ ++ D+ETG+ RGFGFV F D
Sbjct: 22 RALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 422
+G+++D ++ D +T RS+GFGF+T+ + M D + +DGR + A R
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
L + FS FGN++ ++ D++TGK R FGFV F++
Sbjct: 23 LTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
+G ++D ++ D T +S+ FGF+T+ + + +A
Sbjct: 30 FGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKRFNI 670
L++ FS+F + V+T+K TG+ RG+GFV F D + N Q + FNI
Sbjct: 47 LKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNI 102
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDY 613
LR YF FG +V +VV++ G+ +G+GF+ F DY
Sbjct: 28 LRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDY 63
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGR 392
++R +G++VD V+ + RSKG+GFIT+ V QN++P IDGR
Sbjct: 28 LRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNSKP-IIDGR 80
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
++ + ++G++ + +V+ D T +SKG+GF+T+ A KIDGR+ + A
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLA 150
Query: 414 VPREEIKRPE-ASATVKKLFVAGLKQDIEEEDL 509
+ + A +++K++VA + D+ + L
Sbjct: 151 ASGNQGTGSQIADISMRKIYVANVPFDMPADRL 183
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
LR FS++G++ V+ DK TGK +G+GFV F D
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGF 589
RL +F +G++ + DK TGK RGF
Sbjct: 182 RLLNHFMAYGDVEEGPLGFDKVTGKSRGF 210
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEI 431
A+G++ + + D T +S+GF Y A A + IDG+ + K AV ++
Sbjct: 189 AYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAVDGKKG 248
Query: 432 KRP 440
+P
Sbjct: 249 GKP 251
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
++ + ++G++ + +V+ D T +SKG+GF+T+ A KIDGR+ + A
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLA 150
Query: 414 VPREEIKRPE-ASATVKKLFVAGLKQDIEEEDL 509
+ + A +++K++VA + D+ + L
Sbjct: 151 ASGNQGTGSQIADISMRKIYVANVPFDMPADRL 183
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
LR FS++G++ V+ DK TGK +G+GFV F D
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGF 589
RL +F +G++ + DK TGK RGF
Sbjct: 182 RLLNHFMAYGDVEEGPLGFDKVTGKSRGF 210
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEI 431
A+G++ + + D T +S+GF Y A A + IDG+ + K AV ++
Sbjct: 189 AYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAVDGKKG 248
Query: 432 KRP 440
+P
Sbjct: 249 GKP 251
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 222 HRFFIKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
H+ +K+ +GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 25 HKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 637
+ ++++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 26 KETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 222 HRFFIKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
H+ +K+ +GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 25 HKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 637
+ ++++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 26 KETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 222 HRFFIKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
H+ +K+ +GEI++ VV+ D + RSKG+GF+T+ +A A + IDGR
Sbjct: 25 HKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGR 81
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCL 637
+ ++++F FG I+ V+TDK +G+ +G+GFV F + + C+
Sbjct: 26 KETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACV 72
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 625
R L FS FG+I+ ++ +++TG+ RGFGF+ F D +D
Sbjct: 21 RDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 410
++R +G+I+D +M + T RS+GFGFIT++ +DE+ + R++ R
Sbjct: 23 LERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNR 82
Query: 411 AVPR 422
A P+
Sbjct: 83 AEPK 86
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
+LRE G +VS +VTD+ETGK +G+GF E+ D
Sbjct: 24 QLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKD 59
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L++ FS+FG + V + DK +G+ RGFGFV+F
Sbjct: 57 LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQ 338
++GE+ +V + D + RS+GFGF+ +++
Sbjct: 63 SFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
L++ F FGNIVS V T E GK RG+GFV+F+ D
Sbjct: 128 LQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQED 163
Score = 35.1 bits (77), Expect = 0.052
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
LRE F+ FG IVS+++ D E RG+ FV FD+ + R
Sbjct: 217 LREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARR 256
Score = 34.7 bits (76), Expect = 0.068
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
LR++FS G I S ++ D E GK +GFGFV F
Sbjct: 320 LRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCF 351
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
LR+ FS FG I ++ D ET + +GFGF+ FD D
Sbjct: 23 LRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSED 59
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKR 410
++++ +G+I + +++D +T+R KGFGFIT+ +A + KI DGR++ +
Sbjct: 23 LRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEV 82
Query: 411 AVPREEIK 434
A EE++
Sbjct: 83 AKNAEEVR 90
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
+G+I++ V++ D T+RSKG+GF+T+ A A + I+GR
Sbjct: 40 YGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGR 85
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 634
+ + ++F +G+I+ +++DK T + +G+GFV F D R C
Sbjct: 30 KEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+L + F + GN+ V V+ DK TG+ RGFGFV V+ Q N
Sbjct: 106 QLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFN 153
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 622
L FS G +V V+ D+++G+ +GFGFV +D V
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPR 422
G++V+ V+ D + RSKGFGF+TY + V A ++ +DGR + A R
Sbjct: 228 GKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 35.1 bits (77), Expect = 0.052
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 392
G + V V+ D T RS+GFGF+T S V+ AQ +++DGR
Sbjct: 115 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGR 160
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
+ +FS FG + V V +K+TGK + FGF++F+D
Sbjct: 76 IEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFED 110
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+R YF GN++ V+++ DK TG+++G FV++ DR ++QI
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQI 185
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG------ 389
++ I +G + DV +M+D + ++S+G GF+ YS A + N + + G
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285
Query: 390 -RIVEPKRAVPRE 425
R EPKR P E
Sbjct: 286 VRFAEPKRPKPGE 298
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+R YF GN++ V+++ DK TG+++G FV++ DR ++QI
Sbjct: 136 IRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQI 185
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN--NRPHKIDG------ 389
++ I +G + DV +M+D + ++S+G GF+ YS A + N + + G
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLI 285
Query: 390 -RIVEPKRAVPRE 425
R EPKR P E
Sbjct: 286 VRFAEPKRPKPGE 298
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+L + F + GN+ V V+ DK TG+ RGFGFV V+ Q N
Sbjct: 114 QLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFN 161
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPR 422
G++V+ V+ D + RSKGFGF+T S + V +A N+ +DGR + A R
Sbjct: 273 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 392
G + V V+ D T RS+GFGF+T S A V+ AQ ++ +GR
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
L F+ G +V V+ D+++G+ +GFGFV V +
Sbjct: 265 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 305
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+L + F + GN+ V V+ DK TG+ RGFGFV V+ Q N
Sbjct: 114 QLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFN 161
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPR 422
G++V+ V+ D + RSKGFGF+T S + V +A N+ +DGR + A R
Sbjct: 281 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQNNRPHKIDGR 392
G + V V+ D T RS+GFGF+T S A V+ AQ ++ +GR
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGR 168
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
L F+ G +V V+ D+++G+ +GFGFV V +
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 313
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
FS +G IV V+++ DK TGK +GF F+ ++D
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYED 86
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 368
+GEIVDV +++D T +SKGF F+ Y A +N
Sbjct: 59 YGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDN 96
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L+ F +G I SVV DK+TG+ +GFGFV F
Sbjct: 179 LKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
+K +GEI + V+ D T R+KGFGF+ + A N ++ R V A
Sbjct: 179 LKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLPA 238
Query: 414 VPREEIKRPEASATVKKL 467
P K E V+ +
Sbjct: 239 RPFNSGKPREQQQPVESV 256
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
+ LRE+FS+ G I +VSV D++TG +G ++EF +
Sbjct: 418 KNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
R + +F G +V V T+++ G RGFG VEF
Sbjct: 310 RADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEF 345
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 536 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
IVSV V+ +K G G+GFVEF+ +D D+V + N
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFN 165
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 506 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L E FS + ++ + VV D TG+ +G+GFV F D + + + N
Sbjct: 213 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 536 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
IVSV V+ +K G G+GFVEF+ +D D+V + N
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFN 165
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 506 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L E FS + ++ + VV D TG+ +G+GFV F D + + + N
Sbjct: 213 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260
Score = 31.1 bits (67), Expect = 0.84
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Frame = +3
Query: 279 VMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVPREE--------- 428
V+ D T RSKG+GF+ + + +A K R + A PR+
Sbjct: 229 VVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGY 288
Query: 429 -----IKRPEASATVKKLFVAGLKQDIEEEDLE 512
+ RPE +FV GL + +EDL+
Sbjct: 289 MPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLK 321
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 193 LFIGGLDYRTTDSSLKE-FYEHGE 261
+F+GGLD TD LK+ F E GE
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGE 329
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
+ L E FS G IVS V TD G+ RG+GFV+FD D + N ++
Sbjct: 148 KTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKV 198
Score = 35.9 bits (79), Expect = 0.030
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+LRE F+ FG I S V+ D +G +G GFV F RV + N
Sbjct: 343 KLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMN 389
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 649
+L +YF+ +VSV V D T G+G+V + + D ++ + N+
Sbjct: 61 QLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNY 109
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
++ + +G I VM+DP + SKG GF+ +S A N K+ G
Sbjct: 344 LRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVAL 402
Query: 414 VPREEIKRPEASATVKKL 467
R+E +R + A ++
Sbjct: 403 AQRKEERRAKLQAQFSQM 420
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 536 IVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
IVS+ V+ +K G G+GFVEF+ +D D+V + N
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFN 167
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 506 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L E FS + ++ + VV D TG+ +G+GFV F D + + + N
Sbjct: 215 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 262
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 193 LFIGGLDYRTTDSSLKE-FYEHGE 261
+F+GGLD TD LK+ F E GE
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGE 331
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
LR +FS FG IVS V+ D++TG+ R F F+ F
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSF 260
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 598
+L + F FG ++SV V + +TG+ RG G+V
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYV 154
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+G IV V+ D KT R++ F F++++ D A + +G E +R + RE I+
Sbjct: 235 FGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-----FNGTQYEGRRIIVREGIE 289
Query: 435 RPEA 446
+ E+
Sbjct: 290 KSES 293
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 601
++ LR +FS G + V V TD+ETG RGF +++
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYID 530
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L FS G +VSV V+ +K TG+ G+GF+EF + +R N
Sbjct: 40 LTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYN 86
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 506 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L+E F + ++ VVTD TG+ +G+GFV+F + +R + N
Sbjct: 132 LQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMN 179
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 279 VMKDPKTKRSKGFGFITYSQ 338
V+ DP T RSKG+GF+ +++
Sbjct: 148 VVTDPSTGRSKGYGFVKFAE 167
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 652
L E FS G +V +V D+ + + +GFGFV F D + ++ N Q
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQ 98
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 362
G++V+ ++ D + RSKGFGF+T++ A DEAQ
Sbjct: 58 GQVVEAQIVMDRVSDRSKGFGFVTFASA---DEAQ 89
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Frame = +3
Query: 231 FIKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYS---QAHMVDEAQNNRPHKIDGRIV 398
F+KR A+GEI +V ++KD KRSKG+ FI ++ A + E + R + +GR++
Sbjct: 55 FLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMY--NGRMI 111
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
+ L+ F ++G I SVV DK+TG+ +G+GFV F
Sbjct: 421 QENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 398
+K ++GEI + V+ D T R KG+GF+ + EA ++ RIV
Sbjct: 424 LKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIV 478
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 652
F+ FG + ++ D+ETG+ +GF FV F D D + + N Q
Sbjct: 64 FNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQ 108
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 392
I+R +GE+ D ++ D +T RSKGF F+T+ + A ++DGR
Sbjct: 60 IERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGR 113
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
FS+FG IV V+ D+ TG +G+GFV++ D
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 392
++GEIV V+KD T SKG+GF+ Y+ M + A Q ++ +GR
Sbjct: 502 SFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
FS+FG IV V+ D+ TG +G+GFV++ D
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGR 392
++GEIV V+KD T SKG+GF+ Y+ M + A Q ++ +GR
Sbjct: 502 SFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGR 549
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L E F FG + V V D++TG RGFGFV F + R + N
Sbjct: 229 LMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLN 275
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPR 422
+G + V V D KT S+GFGF+ + A N + D I+ + A PR
Sbjct: 236 FGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPR 292
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 506 LREYFSTFGNIVS-VSVVTDKETGKKRGFGFVEFDDYDPVD 625
L + FS FG I S ++ D +TG RGFGF+ +D ++ D
Sbjct: 128 LYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASD 168
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 279 VMKDPKTKRSKGFGFITYSQAHMVDEA 359
+M+DP T S+GFGFI+Y D A
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAA 170
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
R+L F +G I ++ ++TG+ RGFGF+ F D
Sbjct: 26 RQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD 62
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPR 422
+G+I + +M T R +GFGFIT++ D+A ++ ++ +++ +A P+
Sbjct: 35 YGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
R+L F +G I ++ ++TG+ RGFGF+ F D
Sbjct: 26 RQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTD 62
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPR 422
+G+I + +M T R +GFGFIT++ D+A ++ ++ +++ +A P+
Sbjct: 35 YGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
++RE +FG + +V D+ETG +G+ F + D D C N
Sbjct: 374 QVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 421
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
++ +L ++G + ++KD +T SKG+ F Y + D A
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
++RE +FG + +V D+ETG +G+ F + D D C N
Sbjct: 374 QVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 421
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
++ +L ++G + ++KD +T SKG+ F Y + D A
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
++RE +FG + +V D+ETG +G+ F + D D C N
Sbjct: 374 QVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN 421
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
++ +L ++G + ++KD +T SKG+ F Y + D A
Sbjct: 375 VRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 631
F+ G +VS V+ +K+TG+ G+GF+EF + +RV
Sbjct: 82 FAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Score = 34.3 bits (75), Expect = 0.090
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L + +++ ++ VV D+ TG+ +G+GFV F D R + N
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 EPEHTRKLFIGGLDYRTTDSSLKE-FYEHGE 261
+P +T +F+GGLD TD LK F ++GE
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGE 286
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 631
F+ G +VS V+ +K+TG+ G+GF+EF + +RV
Sbjct: 82 FAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Score = 34.3 bits (75), Expect = 0.090
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L + +++ ++ VV D+ TG+ +G+GFV F D R + N
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 172 EPEHTRKLFIGGLDYRTTDSSLKE-FYEHGE 261
+P +T +F+GGLD TD LK F ++GE
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGE 286
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
LR F+ FG + VVTD+ +G +GFGFV +
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAVPREE 428
+GE+ D V+ D + SKGFGF+ Y+ + K +DG ++ + A PRE+
Sbjct: 79 FGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQ 137
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
+LR+ F FG + V + D ETG+ +GFGF++F
Sbjct: 280 QLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
R + E+FS G + V ++ D+ + + +G G++EF D
Sbjct: 182 RDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYD 218
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--NNRPHKIDGRIVE 401
+++I A+G + V + DP+T + KGFGFI + Q AQ N +I GR ++
Sbjct: 281 LRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIK 338
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 598
L E+FSTFG I V +V DKET + RG ++
Sbjct: 277 LMEHFSTFGKISEVHLVLDKETKRSRGIAYI 307
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 530 GNIVSVSVVTDKETGK--KRGFGFVEFDDYDPVDRV 631
G I+SV+++ K+ K G+GFVEFD + V
Sbjct: 596 GKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSV 631
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITY----SQAHMVDEAQNNRPHKIDGRIVEPKRAVPR 422
+G+I +V ++ D +TKRS+G +I Y A ++E N+ GR++ A R
Sbjct: 284 FGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNS---SFQGRLLHILPAKHR 340
Query: 423 E-EIKRPEASATVKKLFVAGLKQDIEEE 503
E K+ ++ + K F KQ EE+
Sbjct: 341 ETSDKQVNDTSNLPKTF----KQKREEQ 364
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 401
+G++VDV + +D +T S+GF F+ Y DEA + ++DGR+V+
Sbjct: 39 YGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVVD 83
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE 401
+G++VDV + +D +T S+GF F+ Y DEA + ++DGR+V+
Sbjct: 39 YGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA-HKAVERLDGRVVD 83
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 521 STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 652
+ +G++ VV D+ TG+ +G+GFV F D + R + N Q
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQ 219
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
F+ G S V+ +K TG+ G+GF+EF + +RV N
Sbjct: 80 FAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYN 122
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 136 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKE-FYEHGEKL 267
N + + +GD+ +P +T +F+GGLD TD LK F + GE L
Sbjct: 246 NTQGANAGDN--DPNNTT-IFVGGLDANVTDDELKSIFGQFGELL 287
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
R L F +G I +VV DK TGK +GFGFV F
Sbjct: 117 RETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
+GEI + V+ D T ++KGFGF+ + EA +I R
Sbjct: 127 YGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2
Query: 497 RRRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
R L F +G I +VV DK TGK +GFGFV F
Sbjct: 117 RETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGR 392
+GEI + V+ D T ++KGFGF+ + EA +I R
Sbjct: 127 YGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+LRE+F+ FG I S V+ D +G RG GFV F + R + N
Sbjct: 342 KLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMN 388
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
+ L E FS FG I+S V D +G+ +G+GFV++D
Sbjct: 147 KALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYD 181
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVPREEIK 434
G++V V V +D T+RS G+G++ Y+ A N ++GR + +V ++
Sbjct: 69 GQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLR 128
Query: 435 RPEASATVKKLFVAGLKQDIEEEDL 509
+ + V +F+ L + I+ + L
Sbjct: 129 K----SGVGNIFIKNLDKSIDHKAL 149
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
L + F FG S ++ D E GK +GFGFV F++ D R
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAAR 279
Score = 31.5 bits (68), Expect = 0.64
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
+ ++ +G V+M+D + K SKGFGF+ + + D+A ++G+ + K
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENS---DDAA-RAVDALNGKTFDDKEW 294
Query: 414 VPREEIKRPEASATVKKLFVAGLKQ 488
+ K+ E +K+ F LK+
Sbjct: 295 FVGKAQKKSERETELKQKFEQSLKE 319
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
+L E F+ G +VSV V D T + G+G+V +
Sbjct: 60 QLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNY 93
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
L+ F +G I S V+ D E GK +GFGFV F++ D R
Sbjct: 45 LKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAAR 84
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKR 410
+K +G+I VVMKD + K SKGFGF+ + A A ++ HK D + R
Sbjct: 45 LKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGR 103
Query: 411 AVPREE 428
A + E
Sbjct: 104 AQKKSE 109
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVE 401
G +VDV ++ D T RS+GFGF+T EA Q +I GR V+
Sbjct: 140 GTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVK 188
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 598
L + F G +V V +V DK T + RGFGFV
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
Score = 34.7 bits (76), Expect = 0.068
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L++ F ++ V+ ++ TG+ RGFGF+ F+ + V N
Sbjct: 235 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 264 IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREE 428
++ V+ + T RS+GFGFI++ A V A +++GR + A RE+
Sbjct: 245 VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 506 LREYFST-FGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L E FS + ++ S VV D TG+ +G+GFV F D + R + N
Sbjct: 218 LHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMN 265
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L FS G + SV V+ +K T + G+GFVEF
Sbjct: 124 LHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEF 156
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 368
GE+ V V+++ T +S+G+GF+ + +E N
Sbjct: 132 GEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
LR+ FS FG +VSV + K G GFV+F D
Sbjct: 337 LRQPFSQFGEVVSVKIPVGK------GCGFVQFAD 365
Score = 25.0 bits (52), Expect(2) = 5.2
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Frame = +3
Query: 279 VMKDPKTKRSKGFGFITYSQAHMVDEAQ--------NNRPHKIDGRIVEPKRAVPREE 428
V+ D T RSKG+GF+ + + A +NR ++ I PKRA+ ++
Sbjct: 234 VVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG--IATPKRAIANQQ 289
Score = 21.8 bits (44), Expect(2) = 5.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 441 EASATVKKLFVAGLKQDIEEEDL 509
+ +T +FV G+ D+ +EDL
Sbjct: 315 DGESTNATIFVGGIDPDVIDEDL 337
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
RLRE F +G IVS V+ E G+ +GFGFV F +
Sbjct: 319 RLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCFSN 353
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
L F FG+I+S VV +E G+ +GFGFV+FD
Sbjct: 128 LERMFCPFGSILSCKVV--EENGQSKGFGFVQFD 159
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L FS +G + SV V+ D G+ RGFGFV F
Sbjct: 218 LHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNF 249
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
++ I +G+IV VM + RSKGFGF+ +S E ++G +V+ K
Sbjct: 320 LREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNC----EESKQAKRYLNGFLVDGKPI 374
Query: 414 VPREEIKRPEASATVKKLFVAGLKQ 488
V R ++ + +++ F A +Q
Sbjct: 375 VVRVAERKEDRIKRLQQYFQAQPRQ 399
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+G + VVVM+D RS+GFGF+ + +A + + G + K+ + +K
Sbjct: 225 YGTVSSVVVMRDGMG-RSRGFGFVNFCNPENAKKAMES----LCGLQLGSKKLFVGKALK 279
Query: 435 RPEASATVKKLF 470
+ E +K+ F
Sbjct: 280 KDERREMLKQKF 291
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
++RE +FG + ++V D+ETG +G+ F + D D C N
Sbjct: 390 QIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALN 437
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
I+ +L ++G + ++KD +T SKG+ F Y + D A
Sbjct: 391 IRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
+ L E FS+FG I+S V D TG+ +G+GFV+F+
Sbjct: 150 KALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFE 184
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+L+E FS +GN+ S V+ + + G RGFGFV + + + R + N
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMN 393
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA-----V 416
++G I+ V D T RSKG+GF+ + + +E+ K++G ++ K+ +
Sbjct: 158 SFGTILSCKVAMDV-TGRSKGYGFVQFEK----EESAQAAIDKLNGMLMNDKQVFVGHFI 212
Query: 417 PREEIKRPEASATVK--KLFVAGLKQDIEEEDL 509
R+E R E + T + ++V L ++I E++L
Sbjct: 213 RRQERARDENTPTPRFTNVYVKNLPKEIGEDEL 245
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA 413
+K + +G + VM +P+ S+GFGF+ YS A + K+ GR
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 414 VPREEIKRPEASATVKKLFVAG 479
R+E +R A ++ G
Sbjct: 407 AQRKEDRRAHLQALFSQIRAPG 428
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF-DDYD 616
LRE F FG + V + D +G+ RGF FVEF D YD
Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYD 100
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKRAVPREEI 431
+G + DV + +D + + +GF F+ + A+ EAQ + + GR E V E
Sbjct: 70 FGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGR--EITVVVASESR 127
Query: 432 KRPE 443
KRPE
Sbjct: 128 KRPE 131
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKRFNIWM 676
+ LR F FG +V V ++ DK + + +G+ F+E+ + + N +I N WM
Sbjct: 296 KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKI--INGWM 352
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIV 398
+GE+V+V ++ D +KRSKG+ F+ Y+ +EA +++G+I+
Sbjct: 305 FGELVEVKIIMDKISKRSKGYAFLEYT----TEEAAGTALKEMNGKII 348
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 148 SESGDDYEEPE-HTRKLFIGGLDYRTTDSSLKEFYE 252
S DD E P T+KLFI GL + T++ +L+ +E
Sbjct: 268 SRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFE 303
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 625
LR+ F FG + + + D TG RGFGFV+F DP D
Sbjct: 52 LRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF--MDPAD 89
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 407
+KR+ +GEI VVMKD + K S+ FGF+ + +A EA K++G +V+ K
Sbjct: 135 LKRLFGEFGEITSAVVMKDGEGK-SRRFGFVNFEKA----EAAVTAIEKMNGVVVDEK 187
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKRA 413
G++ DV ++ DP T+ S+GFGFI+ + + H + GR++ ++A
Sbjct: 99 GKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKA 151
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
R L ++F+ G + V +V D T + RGFGF+ +R +H +
Sbjct: 89 RDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSV 140
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 506 LREYF-STFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 652
L E F + + ++ VV D+ TG+ +G+GFV F D R + N Q
Sbjct: 189 LTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ 238
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 628
L F G + V+ +K+ G G+GF+EF ++ +R
Sbjct: 96 LMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAER 136
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L + FS F + V+ D++TG+ RGFGFV F
Sbjct: 160 LYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 270 DVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 365
D VM D KT RS+GFGF+++ A N
Sbjct: 172 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
LR F FG + + + D TG RGFGF++F DP D + HQ+
Sbjct: 53 LRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF--MDPAD--AAEAKHQM 98
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
LRE S +G I ++ +V TG RG+GFVE++ + R +H +
Sbjct: 80 LREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSL 129
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGR 392
++ ++ +G I ++ +++ T S+G+GF+ Y + A + H IDGR
Sbjct: 80 LREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGR 133
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.5 bits (78), Expect = 0.039
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIK 658
LR+ F +FG++ V V D ETG +GFGFV+F + R L N Q++
Sbjct: 301 LRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDA-RNALNLNGQLE 349
Score = 34.3 bits (75), Expect = 0.090
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
R + E+FS G + V ++ D+ + + RG G+VEF D
Sbjct: 196 RDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYD 232
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN-NRPHKIDGRIVEPKR 410
++++ ++G + V V +D +T KGFGF+ +++ A N N +I GR ++
Sbjct: 301 LRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSA 359
Query: 411 AVPREEIKRPEASAT 455
+ E+ PEA T
Sbjct: 360 VTDQTEV--PEAGQT 372
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.5 bits (78), Expect = 0.039
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
LR+ F FGN++ +++V DK + +GF F+ ++
Sbjct: 93 LRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYE 126
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +1
Query: 190 KLFIGGLDYRTTDSSLKEFYE 252
KL++ GL +RTT+ +L++ +E
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFE 98
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
+ L E FS+FG I+S V D G+ +G+GFV+F+
Sbjct: 146 KALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFE 180
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRA-----V 416
++G I+ V D RSKG+GF+ + + +E K++G ++ K+ V
Sbjct: 154 SFGTILSCKVAMDV-VGRSKGYGFVQFEK----EETAQAAIDKLNGMLLNDKQVFVGHFV 208
Query: 417 PREEIKRPEASA--TVKKLFVAGLKQDIEEEDLE 512
R++ R E+ A + ++V L ++I +++L+
Sbjct: 209 RRQDRARSESGAVPSFTNVYVKNLPKEITDDELK 242
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 35.5 bits (78), Expect = 0.039
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
L FS FG +VS V+ D +TG + F+EF++ + ++ + ++ +
Sbjct: 259 LHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNAL 308
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
RL++ FS FG + +V ++ ++ T + G+G+V F+ + N ++
Sbjct: 73 RLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.1 bits (77), Expect = 0.052
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L E F FG + V D++T RGFGFV F + R + N
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLN 236
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPREEI 431
+G + V D KT S+GFGF+++ A N + D I+ + + P+ ++
Sbjct: 197 FGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEWSTPKTQL 256
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
+ L F +FG ++S V DK TG + FGFV +D
Sbjct: 363 QELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYD 398
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
+K++ GE+ +V ++K+P+TK+SKG F+ ++ A
Sbjct: 230 LKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L + FS F + V+ D++TG+ RGFGFV F
Sbjct: 164 LFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSF 196
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 252 AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 365
A+ D VM D KT RS+GFGF+++ A N
Sbjct: 170 AFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L+E F FG ++ V + D+ RG G+VEF
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKR 410
+K I +GE++ V + D +G G++ + ++AQ +IDG++V+
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
Query: 411 AV-PREEIKRP 440
+ PR+++ P
Sbjct: 174 TLPPRQKVSSP 184
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L+E F FG ++ V + D+ RG G+VEF
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF 146
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKR 410
+K I +GE++ V + D +G G++ + ++AQ +IDG++V+
Sbjct: 114 LKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATF 173
Query: 411 AV-PREEIKRP 440
+ PR+++ P
Sbjct: 174 TLPPRQKVSSP 184
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 34.7 bits (76), Expect = 0.068
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
RL++ FS FG + +V ++ ++ T + G+G+V F+
Sbjct: 92 RLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFN 126
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
LR+ F FG + + + + TG+ RGFGFV++ + + NH++
Sbjct: 63 LRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKV 112
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDG 389
+G + D+ + ++ T +GFGF+ Y A EA HK+ G
Sbjct: 70 FGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIG 114
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
FS FG ++ SV+ G+ RGF F+EF+ D R L + ++
Sbjct: 37 FSDFGKVIR-SVLAKDFRGESRGFAFIEFESADSAGRAMLHMDGRL 81
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 34.7 bits (76), Expect = 0.068
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
L + + ++ VV D TG+ +G+GFV F D + R + N
Sbjct: 230 LETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMN 276
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L FS + SV V+ +K+T + G+GFVEF
Sbjct: 135 LHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEF 167
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
R L ++F+ G + V +V D T + RGFGF+ +R +H +
Sbjct: 59 RDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSV 110
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 398
G++ DV ++ DP T+ S+GFGFI+ + + H + GR++
Sbjct: 69 GKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 34.7 bits (76), Expect = 0.068
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
+ L F FG ++S V DK TG + FGF+ +D
Sbjct: 353 QELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 388
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 34.7 bits (76), Expect = 0.068
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
+ L F FG ++S V DK TG + FGF+ +D
Sbjct: 344 QELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 379
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
++++F T G + V+++TDK G+ +GF +VEF + + V LQ N
Sbjct: 108 VQQHFQTCGTVHRVTILTDK-FGQPKGFAYVEFVEVEAVQE-ALQLN 152
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = +3
Query: 279 VMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATV 458
++KD +T+R KGFGFIT+ D+AQ ++G+IV R + E K EA T
Sbjct: 97 LIKDQQTQRPKGFGFITFESE---DDAQ-KALKALNGKIVN-GRLIFVETAKEVEAPTTS 151
Query: 459 KK 464
K
Sbjct: 152 LK 153
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 655
LR+ F+ F ++ D++T + +GFGF+ F+ D + N +I
Sbjct: 87 LRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 512 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
++F+ G +VS+ ++ + E GK G+GFVEF D + +N
Sbjct: 262 DFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKALENKN 305
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIV 398
++R+ +G ++ V ++ D ++ R K +GF+T+S D+A + K I GR V
Sbjct: 23 VRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAV 77
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
G++V V + P T +S GFGF+T+S V+ A
Sbjct: 201 GKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
+++ F ++G I V +VTD+ T K +G+ F+E+
Sbjct: 153 KIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
Score = 31.9 bits (69), Expect = 0.48
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +3
Query: 234 IKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGR----IV 398
IKR ++G I V ++ D T + KG+ FI Y + A KIDGR V
Sbjct: 154 IKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDV 213
Query: 399 EPKRAVPREEIKR 437
E R VP +R
Sbjct: 214 ERGRTVPNWRPRR 226
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L + F+ F V+ DK TGK +G+GFV F
Sbjct: 153 LSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L +F+ FG ++ +VTD TG+ G ++EF
Sbjct: 532 LSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEF 564
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNNRPHKIDGRIV 398
G++V V+ D T RS+G+GF+ Y S+A M ++ +++GR +
Sbjct: 201 GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAI 248
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFV 598
F G++V VV D +TG+ RG+GFV
Sbjct: 197 FRECGDVVGARVVFDGDTGRSRGYGFV 223
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKRAVPREEIKR 437
E+V+V+ +D T +S+GF F+T S + +N + GR ++ A + K
Sbjct: 112 ELVEVLYNRD--TGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKE 169
Query: 438 PEASATVKKLFVAGLKQDIEEEDL 509
P T KLFV L + E L
Sbjct: 170 PLYPETEHKLFVGNLSWTVTSESL 193
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 616
L + F N V V+ +++TG+ RGF FV + +
Sbjct: 101 LAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVE 137
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFV 598
FSTFG + V+V+ D+ T + RG FV
Sbjct: 77 FSTFGKVARVTVLKDRHTRQSRGVAFV 103
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIK 434
+G++ V V+KD T++S+G F+ Y D A+ R +D +I+ ++
Sbjct: 80 FGKVARVTVLKDRHTRQSRGVAFVLYVSRE--DAAKAAR--SMDAKILNGRKLTVSIAAD 135
Query: 435 RPEASATVKK 464
AS +KK
Sbjct: 136 NGRASEFIKK 145
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 518 FSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
FS + V+ D++TG+ RGFGFV F
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 270 DVVVMKDPKTKRSKGFGFITY 332
D VM D KT RS+GFGF+++
Sbjct: 167 DARVMWDQKTGRSRGFGFVSF 187
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRP-HKIDGRIVEPKRAVPREEI 431
+G+I DV D ++ + FGF+T+ + A +N ++ GR++ A+P E+I
Sbjct: 36 FGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALP-EKI 94
Query: 432 KRPE 443
K E
Sbjct: 95 KGGE 98
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
L F FG+I V D+ K R FGFV F
Sbjct: 29 LHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPV 622
++++F + G + V+++TDK G+ +GF +VEF + + V
Sbjct: 119 VQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAV 156
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 515 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKRFNI 670
+F G +V V ++ + + GK G+GFVEF + ++ ++ + + I
Sbjct: 266 FFKDVGEVVHVRLIVNSQ-GKHAGWGFVEFASANEAEKALVKNGEYLHNYKI 316
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
++ +F+ +VSV +V + E GK G+GFVEF
Sbjct: 174 IKGFFNGVAQVVSVRLVVNHE-GKHVGYGFVEF 205
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.5 bits (68), Expect = 0.64
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 530 GNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 625
G ++ + + DKET K +GF F E++ + D
Sbjct: 31 GRVIDLHIPRDKETDKPKGFAFAEYETEEIAD 62
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
G ++D+ + +D +T + KGF F Y + D A
Sbjct: 31 GRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 607
+ L F +FG ++S V DK TG + FG + FD
Sbjct: 362 QELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSFD 397
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 652
++L E+FS FG I + DK TG+ +GF + + + L++ H+
Sbjct: 241 QKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKK-ALEEPHK 290
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 598
L E F +G I V DK +GK +G+GF+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 395
+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 163 YGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 652
++L +FS FG I + DK TG+ +GF + + R L++ H+
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALEEPHK 308
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 598
L E F +G I V DK +GK +G+GF+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 395
+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 163 YGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 652
++L +FS FG I + DK TG+ +GF + + R L++ H+
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALEEPHK 308
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFV 598
L E F +G I V DK +GK +G+GF+
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI 395
+GEI D + D + +SKG+GFI Y A KI R+
Sbjct: 163 YGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRM 209
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 652
++L +FS FG I + DK TG+ +GF + + R L++ H+
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR-ALEEPHK 308
>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
protein low similarity to prediabetic NOD sera-reactive
autoantigen [Mus musculus] GI:6670773,
anaphase-promoting complex subunit 7 [Homo sapiens]
GI:6180015; contains Pfam profile PF00515: TPR Domain
Length = 558
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 253 AHRILLMKNLWFYSRVHR*KVYVCVQVLHSHRRFPKAS 140
A ++L+ + F+ R HR ++ Q LH + R PK S
Sbjct: 43 AENLILLGDALFHQREHRRAIHTYKQALHHYTRIPKQS 80
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 255 WGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIV 398
+G+++ V V+ D R KGF ++T+S ++A +DGR+V
Sbjct: 44 YGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
G + +V+V+ DP T+ KG F+T++ V +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKA 502
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 500 RRLREYFST-FGNIVSVSVVTDKETGKKRGFGFVEF 604
+ L+E+F GN+VS V+ + + G+GFV F
Sbjct: 203 KHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSF 238
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 231 FIKRIL*AWGEIVDVVVMKDPKTKRSKGFGFITYSQA 341
F+ IL G + + +DP TK+ KGFGF + A
Sbjct: 218 FMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESA 254
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 515 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+F T G + V+++ DK G+ +GF +VEF + + V LQ N
Sbjct: 108 HFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQE-ALQLN 149
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 515 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN 646
+F T G + V+++ DK G+ +GF +VEF + + V LQ N
Sbjct: 108 HFQTCGTVNRVTILMDK-FGQPKGFAYVEFVEVEAVQE-ALQLN 149
>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
profile: PF01722 BolA-like protein
Length = 93
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 301 RDQKDLDLLHILKPIWLMKLKIIGLTKLTEELSSQNEQFQGKRLKDQ 441
++Q + L LKPI L + I G + E+ +EQF+GKRL ++
Sbjct: 4 KEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLER 50
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
+R+ F +GN+ + + DK TG++ + F+++
Sbjct: 126 IRQVFEKYGNVTEIILPKDKMTGERAAYCFIKY 158
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 270 DVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 365
D VM D KT RS+GFGF+++ A N
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 211
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 506 LREYFSTFGNIVS----VSVVTDKETGKKRGFGFVEF 604
L + FS F + S V+ D++TG+ RGFGFV F
Sbjct: 164 LFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 363 NNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 503
+ +P +DGR+V K+A P +K P + + +GL ++I E+
Sbjct: 409 DTKPPFLDGRVVYTKQAEPVMPVKDPTSDMAIISRKGSGLVKEIREK 455
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKRFN 667
+R+ +F F +V V ++ D ++GK G G+ EF + ++ Q+N + R++
Sbjct: 311 QRMLYFFQDF-EVVRVRLIVD-QSGKHMGCGYFEFASANEAEKALEQRNGKSLRYH 364
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 506 LREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
L +YFS+FG I V V TG G+ +++ +
Sbjct: 254 LSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKE 288
>At1g41855.1 68414.m04833 hypothetical protein
Length = 261
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 291 PKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVP 419
P+ K KGFG + + + +E++N +PH + GR+ + P
Sbjct: 13 PELKNVKGFGDLELLASKLEEESRNQKPHTRPPGRVHPAPHSTP 56
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
GEI +V +MKD + SKG+ F+ + + +A
Sbjct: 140 GEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 359
GE+ +V +M++ + KG+ F+T+ + EA
Sbjct: 116 GEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
>At4g38440.1 68417.m05432 expressed protein
Length = 1465
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 473 SWTEARH*RRRLREYFSTFGNIVSVSVVTDKETGKK 580
+WTE R LR FS GN+V VV+ ETG K
Sbjct: 308 AWTERVEAARDLR--FSFDGNVVEEDVVSPAETGGK 341
>At4g30150.1 68417.m04287 expressed protein
Length = 2009
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -2
Query: 228 ICGSIVESTDKKFTCXXXXXXXXXXXXRLHI*YLLDLSPKMLIIN*ELDFSLIC*VFVSA 49
+CG +VE++D K L + +LL S +L +N ++D FVS
Sbjct: 1477 VCGDVVETSDVKKKIIESLIKGDSSEVVLALKHLLIASAAILRLNLQIDGITFSPTFVSV 1536
Query: 48 VLNI 37
+ NI
Sbjct: 1537 LTNI 1540
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Frame = +3
Query: 285 KDPKTKRSKGFGFITYSQAHMVDE-AQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVK 461
K+ K + K ++ + + +E + N+ + D E K+ P++E K+ E S + +
Sbjct: 149 KNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESKSNE 208
Query: 462 KLFVAGLKQ-----DIEEEDLESXXXXXXXXXXXXXXQIKKQERK 581
V G K+ D+E+ED E KK ++K
Sbjct: 209 DKKVKGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKNKKK 253
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
R + + FS +G +V + + K + G+ FVEFDD
Sbjct: 21 REVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDD 54
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
R + + FS +G +V + + K + G+ FVEFDD
Sbjct: 21 REVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDD 54
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 500 RRLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 610
R + + FS +G +V + + K + G+ FVEFDD
Sbjct: 21 REVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDD 54
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYS 335
G++ ++ +P+T+ S+GF F+T S
Sbjct: 96 GKVASCFLVMEPRTRVSRGFAFVTMS 121
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 258 GEIVDVVVMKDPKTKRSKGFGFITYS 335
G++ ++ +P+T+ S+GF F+T S
Sbjct: 95 GKVASCFLVMEPRTRVSRGFAFVTMS 120
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 503 RLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 604
++R + FG I+ V + D+ RG +VEF
Sbjct: 3 KIRVFRGDFGEIIHVQLAIDRAANLSRGDAYVEF 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,118,340
Number of Sequences: 28952
Number of extensions: 295392
Number of successful extensions: 1275
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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