Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30008
(465 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9H9S3 Cluster: Protein transport protein Sec61 subunit... 64 2e-09
UniRef50_A3BXT8 Cluster: Putative uncharacterized protein; n=1; ... 60 3e-08
UniRef50_A0CU87 Cluster: Chromosome undetermined scaffold_28, wh... 57 2e-07
UniRef50_Q22MG2 Cluster: Preprotein translocase, SecY subunit co... 55 7e-07
UniRef50_A3C0K6 Cluster: Putative uncharacterized protein; n=1; ... 51 1e-05
UniRef50_UPI0000499503 Cluster: Sec61 alpha subunit; n=3; Entamo... 48 1e-04
UniRef50_Q5KC69 Cluster: Protein transporter, putative; n=4; Euk... 46 4e-04
UniRef50_A2DZB2 Cluster: Preprotein translocase, SecY subunit, p... 44 0.002
UniRef50_Q7QS32 Cluster: GLP_661_10951_12423; n=1; Giardia lambl... 40 0.035
UniRef50_Q8U019 Cluster: Preprotein translocase subunit secY; n=... 37 0.19
UniRef50_Q4DZU4 Cluster: Putative uncharacterized protein; n=2; ... 36 0.43
UniRef50_A6C8L5 Cluster: Putative uncharacterized protein; n=1; ... 33 2.3
UniRef50_A2ZMZ3 Cluster: Putative uncharacterized protein; n=2; ... 33 3.1
UniRef50_A2ZMY6 Cluster: Putative uncharacterized protein; n=3; ... 33 3.1
UniRef50_Q7RNN8 Cluster: TATA element modulatory factor; n=4; Pl... 33 4.1
UniRef50_Q4Q8V2 Cluster: Putative uncharacterized protein; n=3; ... 33 4.1
UniRef50_UPI0000D5740E Cluster: PREDICTED: similar to Centromeri... 32 5.4
UniRef50_Q54T74 Cluster: Leucine-rich repeat-containing protein;... 32 5.4
UniRef50_Q2FSG8 Cluster: Preprotein translocase secY subunit; n=... 32 5.4
UniRef50_A0RUE4 Cluster: Preprotein translocase secY subunit; n=... 32 5.4
UniRef50_Q9UX84 Cluster: Preprotein translocase subunit secY; n=... 32 5.4
UniRef50_O28377 Cluster: Preprotein translocase subunit secY; n=... 32 5.4
UniRef50_Q7QS31 Cluster: GLP_661_12509_12237; n=1; Giardia lambl... 32 7.1
UniRef50_Q4N520 Cluster: Putative uncharacterized protein; n=2; ... 32 7.1
UniRef50_A5DTE1 Cluster: Putative uncharacterized protein; n=1; ... 32 7.1
UniRef50_A0B9U7 Cluster: Preprotein translocase, SecY subunit; n... 32 7.1
UniRef50_P28541 Cluster: Preprotein translocase subunit secY; n=... 32 7.1
UniRef50_Q751E3 Cluster: AGL237Cp; n=1; Eremothecium gossypii|Re... 31 9.4
UniRef50_A6UWW1 Cluster: Preprotein translocase, SecY subunit; n... 31 9.4
UniRef50_Q9YDD0 Cluster: Preprotein translocase subunit secY; n=... 31 9.4
>UniRef50_Q9H9S3 Cluster: Protein transport protein Sec61 subunit
alpha isoform 2; n=176; Eukaryota|Rep: Protein transport
protein Sec61 subunit alpha isoform 2 - Homo sapiens
(Human)
Length = 476
Score = 63.7 bits (148), Expect = 2e-09
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 186
G GTGILLAVTIIYQYFEIFVKEQAE+GGM L F
Sbjct: 439 GAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476
Score = 62.9 bits (146), Expect = 3e-09
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 416 YIPTAAAFGGLCIGALSVLADFLGAIGSG 444
>UniRef50_A3BXT8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 377
Score = 59.7 bits (138), Expect = 3e-08
Identities = 26/29 (89%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGG+CIGAL+VLADF+GAIGSG
Sbjct: 319 YIPTAAAFGGVCIGALTVLADFMGAIGSG 347
Score = 45.2 bits (102), Expect = 7e-04
Identities = 23/32 (71%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQA-EMG 165
G GTGILLAVTIIYQYFE F KE+A E+G
Sbjct: 342 GAIGSGTGILLAVTIIYQYFETFEKERATELG 373
>UniRef50_A0CU87 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=11; Eukaryota|Rep: Chromosome
undetermined scaffold_28, whole genome shotgun sequence
- Paramecium tetraurelia
Length = 474
Score = 56.8 bits (131), Expect = 2e-07
Identities = 24/29 (82%), Positives = 28/29 (96%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIP AA+FGG+CIGAL++LADFLGAIGSG
Sbjct: 417 YIPIAASFGGMCIGALTILADFLGAIGSG 445
Score = 36.7 bits (81), Expect = 0.25
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAE 159
G GTGILL+VTIIY YFE KE+ +
Sbjct: 440 GAIGSGTGILLSVTIIYGYFETLKKEKEQ 468
>UniRef50_Q22MG2 Cluster: Preprotein translocase, SecY subunit
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Preprotein translocase, SecY subunit
containing protein - Tetrahymena thermophila SB210
Length = 551
Score = 55.2 bits (127), Expect = 7e-07
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIP AA FGGLCIGALSV+ADF+G IGSG
Sbjct: 495 YIPIAATFGGLCIGALSVVADFIGVIGSG 523
Score = 35.5 bits (78), Expect = 0.57
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAE 159
G GTGILLAV I+Y YFE F +E+ +
Sbjct: 518 GVIGSGTGILLAVNIVYGYFEQFKREKEQ 546
>UniRef50_A3C0K6 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 215
Score = 50.8 bits (116), Expect = 1e-05
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YI TAAA GGLC+GAL++LAD GAIGSG
Sbjct: 166 YISTAAALGGLCVGALTILADMTGAIGSG 194
Score = 32.3 bits (70), Expect = 5.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 70 SGPSAPGTGILLAVTIIYQYFEIFVKEQ 153
+G GTGILLA T++Y + F KE+
Sbjct: 188 TGAIGSGTGILLAATVVYNLIDAFQKEE 215
>UniRef50_UPI0000499503 Cluster: Sec61 alpha subunit; n=3; Entamoeba
histolytica HM-1:IMSS|Rep: Sec61 alpha subunit -
Entamoeba histolytica HM-1:IMSS
Length = 447
Score = 48.0 bits (109), Expect = 1e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIP AA+FGG+CI LSV AD LGA+GSG
Sbjct: 388 YIPIAASFGGMCISLLSVGADLLGAVGSG 416
>UniRef50_Q5KC69 Cluster: Protein transporter, putative; n=4;
Eukaryota|Rep: Protein transporter, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 478
Score = 46.0 bits (104), Expect = 4e-04
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 6 IPTAAAFGGLCIGALSVLADFLGAIGSG 89
IPTAAAFGG +G LSV+AD +GA+GSG
Sbjct: 417 IPTAAAFGGATLGLLSVVADMMGALGSG 444
Score = 40.3 bits (90), Expect = 0.020
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 43 GLCQCWPTSSGPSAPGTGILLAVTIIYQYFEIFVKEQA--EMGGMSTLLF 186
GL G GTGIL+A TIIY YFE+ +KE + + G+ LLF
Sbjct: 429 GLLSVVADMMGALGSGTGILMATTIIYGYFELGIKENSGIDATGLGDLLF 478
>UniRef50_A2DZB2 Cluster: Preprotein translocase, SecY subunit,
putative; n=5; Trichomonas vaginalis G3|Rep: Preprotein
translocase, SecY subunit, putative - Trichomonas
vaginalis G3
Length = 484
Score = 43.6 bits (98), Expect = 0.002
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAA GG+ + LS +ADFL A GSG
Sbjct: 419 YIPTAAALGGILVALLSFVADFLSAFGSG 447
>UniRef50_Q7QS32 Cluster: GLP_661_10951_12423; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_661_10951_12423 - Giardia lamblia
ATCC 50803
Length = 490
Score = 39.5 bits (88), Expect = 0.035
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAA GGL +G + AD GAIGSG
Sbjct: 436 YIPTAALAGGLILGFVGFCADIFGAIGSG 464
>UniRef50_Q8U019 Cluster: Preprotein translocase subunit secY; n=4;
Thermococcaceae|Rep: Preprotein translocase subunit secY
- Pyrococcus furiosus
Length = 468
Score = 37.1 bits (82), Expect = 0.19
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIP +G L + ++VLADFLGA+G+G
Sbjct: 405 YIPYVTFWGSLTVALIAVLADFLGALGTG 433
>UniRef50_Q4DZU4 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 1006
Score = 35.9 bits (79), Expect = 0.43
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = -1
Query: 261 SIRAETTIKTELNAAVRLP--LSLRDLEEQCAHAAHLRLFLDKDLEVLVN-DGDGEQ 100
SIR ++ L A+R+P + +R +EEQ A H+RL LD+ V V+ DGE+
Sbjct: 65 SIRMGEELELFLRLALRIPSWMQVRQIEEQYAEQIHVRLALDRLSTVFVDKQNDGEE 121
>UniRef50_A6C8L5 Cluster: Putative uncharacterized protein; n=1;
Planctomyces maris DSM 8797|Rep: Putative
uncharacterized protein - Planctomyces maris DSM 8797
Length = 103
Score = 33.5 bits (73), Expect = 2.3
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -1
Query: 288 RYENVHLMMSI--RAETTIKTELNAAVRLPLSLRDLEEQCAHAAHLRLFLDKDLEVLVND 115
R E L++ R T I+ L+ V L L +L+ L + L+ +++VLV+D
Sbjct: 16 RIEGAKLLLGFWERERTAIEITLSRPVTLETRLSELDYDSLIVVELVMLLEGEMKVLVSD 75
Query: 114 GDGEQYPSARS 82
GD E ++S
Sbjct: 76 GDYEGLSDSQS 86
>UniRef50_A2ZMZ3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 546
Score = 33.1 bits (72), Expect = 3.1
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIG 83
Y+ AA F G C+G LS+LA FLG G
Sbjct: 376 YMTIAAIFVGFCVGFLSLLAGFLGLDG 402
>UniRef50_A2ZMY6 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 384
Score = 33.1 bits (72), Expect = 3.1
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
Y+ AA G+C+G L++LA F+G GSG
Sbjct: 329 YMTMAAYIVGICVGLLNLLAGFMGLGGSG 357
>UniRef50_Q7RNN8 Cluster: TATA element modulatory factor; n=4;
Plasmodium (Vinckeia)|Rep: TATA element modulatory
factor - Plasmodium yoelii yoelii
Length = 867
Score = 32.7 bits (71), Expect = 4.1
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 400 HAHNTTPVGALPSTQQILNLKSNFFDKVQRCIHIQHYQI*KRTPNDVDSSRNDNKN 233
+AHN PV L ++ N K N F + I H R+ + DS+ +DNKN
Sbjct: 150 NAHNKDPVSNLEASNSNYNFKHNLFTHPGGYVSIDHK---NRSRSSNDSAPHDNKN 202
>UniRef50_Q4Q8V2 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 927
Score = 32.7 bits (71), Expect = 4.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 105 EQYPSARSRWPRGSRPALTEPRCTVLRTRPPSGC 4
+ P + SR+ RG+ P+L RC PPS C
Sbjct: 106 DSLPQSFSRYERGAAPSLPRTRCATSLPLPPSAC 139
>UniRef50_UPI0000D5740E Cluster: PREDICTED: similar to Centromeric
protein E (CENP-E protein); n=1; Tribolium
castaneum|Rep: PREDICTED: similar to Centromeric protein
E (CENP-E protein) - Tribolium castaneum
Length = 405
Score = 32.3 bits (70), Expect = 5.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 421 HHPRTRRHAHNTTPVGALPSTQQILNLKSNFFDKVQRCIHIQHYQI 284
++ TR H N +LP Q IL K+ DK+++ +H Q Q+
Sbjct: 12 YYSNTRSHLSNDQEHQSLPPLQVILEEKNRVIDKLKKQVHNQRIQL 57
>UniRef50_Q54T74 Cluster: Leucine-rich repeat-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: Leucine-rich
repeat-containing protein - Dictyostelium discoideum AX4
Length = 1378
Score = 32.3 bits (70), Expect = 5.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 22 RSEDCASGLCQCWPTSSGPS 81
R+ C SG+C+C+P +GPS
Sbjct: 812 RTNGCRSGICECYPNLTGPS 831
>UniRef50_Q2FSG8 Cluster: Preprotein translocase secY subunit; n=4;
Methanomicrobiales|Rep: Preprotein translocase secY
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 479
Score = 32.3 bits (70), Expect = 5.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGS 86
YIP GG+ IG +SV+A+ G IG+
Sbjct: 413 YIPRVTVIGGVFIGIMSVVANLFGVIGA 440
>UniRef50_A0RUE4 Cluster: Preprotein translocase secY subunit; n=2;
Thermoprotei|Rep: Preprotein translocase secY subunit -
Cenarchaeum symbiosum
Length = 478
Score = 32.3 bits (70), Expect = 5.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIP+ G + +GAL+ +D LG GSG
Sbjct: 414 YIPSVTIIGSMILGALAGASDVLGVFGSG 442
>UniRef50_Q9UX84 Cluster: Preprotein translocase subunit secY; n=4;
Sulfolobaceae|Rep: Preprotein translocase subunit secY -
Sulfolobus solfataricus
Length = 469
Score = 32.3 bits (70), Expect = 5.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 43 GLCQCWPTSSGPSAPGTGILLAVTIIYQYFEIFVKEQA 156
GL + T G G GILLAVTI QY+ + E++
Sbjct: 419 GLIAVFATLLGAYGTGIGILLAVTIAIQYYSLLAYERS 456
>UniRef50_O28377 Cluster: Preprotein translocase subunit secY; n=44;
Euryarchaeota|Rep: Preprotein translocase subunit secY -
Archaeoglobus fulgidus
Length = 493
Score = 32.3 bits (70), Expect = 5.4
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 88 GTGILLAVTIIYQYFEIFVKEQ 153
GTG+LLAV+I Y+++E KEQ
Sbjct: 456 GTGLLLAVSIAYRFYEDLAKEQ 477
Score = 31.5 bits (68), Expect = 9.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGS 86
YIP GG IG L+++A+ LG IG+
Sbjct: 426 YIPKVTILGGAIIGILTLVANMLGTIGN 453
>UniRef50_Q7QS31 Cluster: GLP_661_12509_12237; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_661_12509_12237 - Giardia lamblia
ATCC 50803
Length = 90
Score = 31.9 bits (69), Expect = 7.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 88 PEPMAPRKSASTDRAPMHSPPNAAAVGM 5
P+P+AP+ SA P PP AAVGM
Sbjct: 57 PDPIAPKMSAQNPTNPSIRPPARAAVGM 84
>UniRef50_Q4N520 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria parva
Length = 249
Score = 31.9 bits (69), Expect = 7.1
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = -1
Query: 339 NLIFSIKYNDVFTSNTTRYENVHLMMSIRAETTIKTELNAAVRLPLSLRDLEEQCAHAAH 160
NL ++ ND+ SN EN + +++ E +T L A L LR+ EQC +
Sbjct: 30 NLNYAGNSNDL--SNKIN-ENSLVELTLNLERERETYLEAVAVLHDQLRESHEQCQQLVN 86
Query: 159 LRLFLDKDLEVLVNDG 112
L ++LE V+DG
Sbjct: 87 SHAELTRELEAEVDDG 102
>UniRef50_A5DTE1 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 1101
Score = 31.9 bits (69), Expect = 7.1
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -1
Query: 183 EQCAHAAHLRLFLDKDLEVLVNDGDGEQYPSARSRWPRGSRPALTEPRCTVLRTR 19
E HA L L DK LE+ VN GE A + P G A + RC V+ R
Sbjct: 145 ESVQHAPTLGLINDKSLELTVNLYRGEYITMAENVEPAGIVVATSLQRCIVISLR 199
>UniRef50_A0B9U7 Cluster: Preprotein translocase, SecY subunit; n=6;
Euryarchaeota|Rep: Preprotein translocase, SecY subunit
- Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 537
Score = 31.9 bits (69), Expect = 7.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIG 83
YIP GG IG L+V+A LG +G
Sbjct: 470 YIPKVTVIGGAIIGLLTVIASLLGTLG 496
>UniRef50_P28541 Cluster: Preprotein translocase subunit secY; n=10;
Euryarchaeota|Rep: Preprotein translocase subunit secY -
Methanococcus vannielii
Length = 438
Score = 31.9 bits (69), Expect = 7.1
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 70 SGPSAPGTGILLAVTIIYQYFEIFVKEQ 153
+G GTG+LL V+I+Y+ +E V+EQ
Sbjct: 396 TGALGGGTGVLLTVSIVYRLYEQLVQEQ 423
>UniRef50_Q751E3 Cluster: AGL237Cp; n=1; Eremothecium gossypii|Rep:
AGL237Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 578
Score = 31.5 bits (68), Expect = 9.4
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = -3
Query: 259 DSSRNDNKNGAERSGPTAAIITRLRRAVCSCRPSPLVP*QRSRSTGK*W*RRAVSQCPEP 80
+ + +D+ E P AA + RRA +PS P Q SR T + R + P
Sbjct: 420 NDTEDDSWEEEEEKAPAAAPLPPPRRAAAPAQPSRESPEQSSRETSE-QPSRETPELPRR 478
Query: 79 MAPRKS-ASTDRAPMHSPPNAAA 14
P + + D+AP +P A+
Sbjct: 479 DTPEPTEKADDKAPSGTPSRTAS 501
>UniRef50_A6UWW1 Cluster: Preprotein translocase, SecY subunit; n=2;
Methanococcus|Rep: Preprotein translocase, SecY subunit
- Methanococcus aeolicus Nankai-3
Length = 443
Score = 31.5 bits (68), Expect = 9.4
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQ 153
G GTG+LL V+I+Y+ +E V+EQ
Sbjct: 403 GALGGGTGVLLTVSIVYRMYEQLVQEQ 429
>UniRef50_Q9YDD0 Cluster: Preprotein translocase subunit secY; n=1;
Aeropyrum pernix|Rep: Preprotein translocase subunit
secY - Aeropyrum pernix
Length = 457
Score = 31.5 bits (68), Expect = 9.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQA 156
G GTG+LLAV II QY+ + +E+A
Sbjct: 414 GAYGTGTGLLLAVGIINQYYAMITRERA 441
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,114,994
Number of Sequences: 1657284
Number of extensions: 9459076
Number of successful extensions: 34562
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34545
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25191138900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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