Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30006
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.5  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   7.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   10.0 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   10.0 

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 458 LMCNACLILDFCNDKLLCISS*TNSFLFIIQSL*CVFFFVHEFCLFVYFYF 610
           L+ N  +I  FC  K L     T S +F++    C FF + +  +F+Y  F
Sbjct: 63  LLGNGLVIWIFCAAKSLR----TPSNMFVVNLAICDFFMMIKTPIFIYNSF 109


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 567 FFLFTSFAYSFIFTLKF 617
           FF+F SFA+ F   ++F
Sbjct: 278 FFVFLSFAFIFATIIQF 294


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 134 TVPPSLL*ASEAFVRLDRLYLLQQ 205
           T PP L+     F  +DRLY + +
Sbjct: 42  TKPPFLVQLHSCFQTMDRLYFVME 65


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 730 PNIPGSRTSLPSGNSTIG 677
           PN+PGS  ++P+  S  G
Sbjct: 433 PNMPGSMPTMPTMPSMAG 450


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 99  PRKFPTWRIDTRPSPLAFYKPQRHSS 176
           P   P W +  R +PL   +P + S+
Sbjct: 481 PTLLPQWCLPPREAPLVGVQPHQDSA 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,493
Number of Sequences: 438
Number of extensions: 3848
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)