Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30004
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p...    31   1.4  
Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z75952-3|CAB00096.1|  286|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 195 SFIIQNVSLYSLAP-TRRDLRSTIEFVKIIQLYKYGYCKCGRAVPL 61
           S  +QN+   ++AP T+R ++  I   + IQ    G+  CG AVPL
Sbjct: 15  SIFVQNLPDTTVAPRTKRTIKIGIAAAQRIQTSSIGWSVCGGAVPL 60


>Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical
           protein AH6.1 protein.
          Length = 1137

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 195 SFIIQNVSLYSLAP-TRRDLRSTIEFVKIIQLYKYGYCKCGRAVPL 61
           S  +QN+   ++AP T+R ++  I   + IQ    G+  CG AVPL
Sbjct: 15  SIFVQNLPDTTVAPRTKRTIKIGIAAAQRIQTSSIGWSVCGGAVPL 60


>Z75952-3|CAB00096.1|  286|Caenorhabditis elegans Hypothetical
           protein F55H12.6b protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 836 GSSGFINYISQYDLKHPKWIYQRDALTN 753
           GSSGFI ++     KHP  +YQ  A++N
Sbjct: 31  GSSGFIRHLR---CKHPNVLYQMGAISN 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,167
Number of Sequences: 27780
Number of extensions: 298617
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)