Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30004
         (843 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6LFL8 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  

>UniRef50_Q6LFL8 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1434

 Score = 34.3 bits (75), Expect = 3.9
 Identities = 20/67 (29%), Positives = 36/67 (53%)
 Frame = -1

Query: 282  QNNCTKLV**NKNNN*KLYFTKKKKNEEKSFIIQNVSLYSLAPTRRDLRSTIEFVKIIQL 103
            +NN  + +  N N N KL F  +K++ EK+ I +N+ + +        ++ +   +II L
Sbjct: 1242 ENNFNRKINNNINQNKKLQFCIQKEDNEKNKIFKNIIINNNNNNNNKNKNILNEFEII-L 1300

Query: 102  YKYGYCK 82
             KY YC+
Sbjct: 1301 NKYSYCQ 1307


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,869,569
Number of Sequences: 1657284
Number of extensions: 12283128
Number of successful extensions: 29367
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 28211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29354
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73783549980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)