BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30004 (843 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical p... 31 1.4 Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical pr... 31 1.4 Z75952-3|CAB00096.1| 286|Caenorhabditis elegans Hypothetical pr... 28 9.5 >Z48009-12|CAA88089.1| 1137|Caenorhabditis elegans Hypothetical protein AH6.1 protein. Length = 1137 Score = 30.7 bits (66), Expect = 1.4 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = -1 Query: 195 SFIIQNVSLYSLAP-TRRDLRSTIEFVKIIQLYKYGYCKCGRAVPL 61 S +QN+ ++AP T+R ++ I + IQ G+ CG AVPL Sbjct: 15 SIFVQNLPDTTVAPRTKRTIKIGIAAAQRIQTSSIGWSVCGGAVPL 60 >Z48007-3|CAA88054.1| 1137|Caenorhabditis elegans Hypothetical protein AH6.1 protein. Length = 1137 Score = 30.7 bits (66), Expect = 1.4 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = -1 Query: 195 SFIIQNVSLYSLAP-TRRDLRSTIEFVKIIQLYKYGYCKCGRAVPL 61 S +QN+ ++AP T+R ++ I + IQ G+ CG AVPL Sbjct: 15 SIFVQNLPDTTVAPRTKRTIKIGIAAAQRIQTSSIGWSVCGGAVPL 60 >Z75952-3|CAB00096.1| 286|Caenorhabditis elegans Hypothetical protein F55H12.6b protein. Length = 286 Score = 27.9 bits (59), Expect = 9.5 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -2 Query: 836 GSSGFINYISQYDLKHPKWIYQRDALTN 753 GSSGFI ++ KHP +YQ A++N Sbjct: 31 GSSGFIRHLR---CKHPNVLYQMGAISN 55 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,566,167 Number of Sequences: 27780 Number of extensions: 298617 Number of successful extensions: 649 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 637 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 648 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2087513582 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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