Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30002
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    28   8.1  
AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 302  YPRKHTKILHEKNP*SLTTIFKKFKS 379
            YP  H ++  EKNP     IFK F S
Sbjct: 1394 YPHYHAEVNREKNPVVRRNIFKNFTS 1419


>AC006620-1|AAF39780.1|  754|Caenorhabditis elegans Hypothetical
           protein C51G7.3 protein.
          Length = 754

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 302 YPRKHTKILHEKNP*SLTTIFKKFKS 379
           YP  H ++  EKNP     IFK F S
Sbjct: 19  YPHYHAEVNREKNPVVRRNIFKNFTS 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,608,184
Number of Sequences: 27780
Number of extensions: 316078
Number of successful extensions: 650
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)