Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30002
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    24   1.3  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    24   1.3  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           24   1.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   7.0  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 84  EHFQNCQHL*VRRRETFDLIHFK 152
           EHF+N +     RR T DL+ FK
Sbjct: 30  EHFENEERADRHRRVTCDLLSFK 52


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 84  EHFQNCQHL*VRRRETFDLIHFK 152
           EHF+N +     RR T DL+ FK
Sbjct: 30  EHFENEERADRHRRVTCDLLSFK 52


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 84  EHFQNCQHL*VRRRETFDLIHFK 152
           EHF+N +     RR T DL+ FK
Sbjct: 5   EHFENEERADRHRRVTCDLLSFK 27


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 417 NLKSEYSNDTAITLLNFLK 361
           ++K E  NDT I ++NF K
Sbjct: 497 SVKRELGNDTVIVMMNFSK 515


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 249 NGNIHH*YLNTKVKYNIEY 193
           N N ++ Y N K+ YNI Y
Sbjct: 314 NNNNYNNYNNKKLYYNINY 332


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 721 RTKTSMTSHYTIDH 680
           RTK S+T+H ++ H
Sbjct: 46  RTKNSLTTHKSLQH 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,502
Number of Sequences: 438
Number of extensions: 4301
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)