Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20999
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 138 6e-34
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 133 2e-32
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 121 1e-28
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 121 1e-28
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 113 3e-26
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 62 1e-10
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 42 1e-04
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 30 0.30
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 29 0.69
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.91
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 27 3.7
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 3.7
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 26 4.9
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 6.4
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 6.4
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 138 bits (335), Expect = 6e-34
Identities = 63/86 (73%), Positives = 73/86 (84%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKXEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 429
PHNTIFDAKRLIGRK +D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
VL KM+ETAEAYLG V +AV+TVPA
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPA 146
Score = 136 bits (330), Expect = 2e-33
Identities = 65/76 (85%), Positives = 70/76 (92%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPIAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSI 689
FNDSQRQATKDAG I+GLNVLRIINEP AAAIAYGLD+ GE NVLIFDLGGGTFDVS+
Sbjct: 148 FNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSL 207
Query: 690 LTIEDGIFEVKSTAGD 737
LTIE+GIFEVK+TAGD
Sbjct: 208 LTIEEGIFEVKATAGD 223
Score = 112 bits (269), Expect = 6e-26
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 61
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 133 bits (322), Expect = 2e-32
Identities = 64/76 (84%), Positives = 69/76 (90%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPIAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSI 689
FNDSQRQATKDAG I+GLNVLRIINEP AAAIAYGLD+ E NVLIFDLGGGTFDVS+
Sbjct: 148 FNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSL 207
Query: 690 LTIEDGIFEVKSTAGD 737
LTIE+GIFEVK+TAGD
Sbjct: 208 LTIEEGIFEVKATAGD 223
Score = 131 bits (316), Expect = 1e-31
Identities = 59/86 (68%), Positives = 71/86 (82%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKXEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 429
PHNTIFDAKRLIGR+ D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
VL KM+E+AEA+LG V +AV+TVPA
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPA 146
Score = 112 bits (269), Expect = 6e-26
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 61
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 121 bits (291), Expect = 1e-28
Identities = 54/76 (71%), Positives = 71/76 (93%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPIAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSI 689
FND+QRQATKDAGTI+GLNV+RI+NEP AAAIAYGLDK T E++++++DLGGGTFDVS+
Sbjct: 181 FNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSL 239
Query: 690 LTIEDGIFEVKSTAGD 737
L+I++G+FEV +T+GD
Sbjct: 240 LSIDNGVFEVLATSGD 255
Score = 109 bits (263), Expect = 3e-25
Identities = 49/86 (56%), Positives = 67/86 (77%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKXEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 429
P NTIFD KRLIGRK ++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
+L+KMK+TAEAYLGK V +AV+TVPA
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPA 179
Score = 98.3 bits (234), Expect = 1e-21
Identities = 43/57 (75%), Positives = 50/57 (87%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNP 94
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 121 bits (291), Expect = 1e-28
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPIAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSI 689
F+DSQR ATKDAG I+GLNVLRIINEP AAAIAYGLD K +NVLIFDLGGGTFDVS+
Sbjct: 152 FSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSL 211
Query: 690 LTIEDGIFEVKSTAGD 737
L I+ G+FEV +TAGD
Sbjct: 212 LKIQGGVFEVLATAGD 227
Score = 115 bits (277), Expect = 6e-27
Identities = 53/86 (61%), Positives = 65/86 (75%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKXEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 429
P NT+FDAKRLIGR+ ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+M
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
VLTKMKE +EA L K V+ AVITVPA
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPA 150
Score = 100 bits (239), Expect = 2e-22
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNP 65
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 113 bits (271), Expect = 3e-26
Identities = 53/76 (69%), Positives = 64/76 (84%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPIAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSI 689
FNDSQRQATK AG I+GLNVLR++NEP AAA+AYGLDKK + V +FDLGGGTFD+SI
Sbjct: 194 FNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK--NDAIVAVFDLGGGTFDISI 251
Query: 690 LTIEDGIFEVKSTAGD 737
L + +G+FEV+ST GD
Sbjct: 252 LELNNGVFEVRSTNGD 267
Score = 78.6 bits (185), Expect = 9e-16
Identities = 37/86 (43%), Positives = 53/86 (61%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKXEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 429
P NT F KRLIGR+ ++ VQ D+K P+++V + KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGF 166
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
+L+KM+ETA YLGK V+NAV+TVPA
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPA 192
Score = 73.3 bits (172), Expect = 3e-14
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +2
Query: 71 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 247
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 248 NPTTQY 265
NP +
Sbjct: 109 NPENTF 114
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 61.7 bits (143), Expect = 1e-10
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPIAAAIAYGLDKKGTGE----RNVLIFDLGGGTF 677
F D QR+A +A I+GLN LR++N+ AAA+ YG+ K E R V I D G +
Sbjct: 152 FTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNY 211
Query: 678 DVSILTIEDGIFEVKSTAGD 737
VSI+ G F +KST D
Sbjct: 212 SVSIVEFSRGQFHIKSTVCD 231
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = +2
Query: 68 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 247
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 248 N 250
N
Sbjct: 63 N 63
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 NTIFDAKRLIGRKXEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMV 432
NT+ KRL GR +D ++ + ++ G KV Y E+ F ++ +
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAY 125
Query: 433 LTKMKETAEAYLGKTVQNAVITVPA 507
TK+K AEA L +V + VI++PA
Sbjct: 126 FTKIKAIAEAELIGSVSDVVISIPA 150
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 250
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRN 82
Score = 29.1 bits (62), Expect = 0.69
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = +1
Query: 256 NTIFDAKRLIGRKXEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED------KTFFPEE 417
N++ + + L+G+ ++ T+ H+ V+ G+ K+ + ++ K E
Sbjct: 85 NSVTNFRDLLGKSHDELTLHHC--HYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHE 142
Query: 418 VSSMVLTKMKETAEAYLGKTVQNAVITVP 504
S L ++ E+AE +LG V V++VP
Sbjct: 143 ASVRHLRRLTESAEDFLGTKVNGCVMSVP 171
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 30.3 bits (65), Expect = 0.30
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTT 259
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA- 83
Query: 260 QYSMPNV 280
+S+ NV
Sbjct: 84 -HSIRNV 89
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 29.1 bits (62), Expect = 0.69
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 179 PSYVAFTDTERLIGDAAKNQVAMNPTTQYSMPNVSSDVSXKMLLC 313
P +A T ER++ AAK A+N T Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 75 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 170
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 551 GTCIFCGLSLRVIEDAGTVMTAFCTVLPR*ASAVSFIF 438
G C+FCGL+ D+ T+ C R A+ +S ++
Sbjct: 1827 GLCLFCGLTKFEHADSDMAYTSDCRSWARKANLISLVY 1864
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 551 GTCIFCGLSLRVIEDAGTVMTAFCTVLPR*ASAVSFIF 438
G C+FCGL+ D+ T+ C R A+ +S ++
Sbjct: 1827 GLCLFCGLTKFEHADSDMAYTSDCRSWARKANLISLVY 1864
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.6
Identities = 28/144 (19%), Positives = 64/144 (44%)
Frame = -2
Query: 671 TAAEVKDKYISFSSTLFVKTVSNRSSNRFIDDSENVQARDGTCIFCGLSLRVIEDAGTVM 492
T++ V + +S+ V T + +S+ ++ S + + ++ + ++ T +
Sbjct: 3241 TSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 3300
Query: 491 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSAC 312
T+ T+ S + S+ +TSS S+P+ ++ +L ++T+S S
Sbjct: 3301 TSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSS-SILNSSTP 3359
Query: 311 TVASSXLRPMRRLASNIVLWGSSP 240
+SS L + S+ V+ S+P
Sbjct: 3360 VTSSSVLNSSTPITSSTVVNSSTP 3383
Score = 27.5 bits (58), Expect = 2.1
Identities = 29/144 (20%), Positives = 64/144 (44%)
Frame = -2
Query: 671 TAAEVKDKYISFSSTLFVKTVSNRSSNRFIDDSENVQARDGTCIFCGLSLRVIEDAGTVM 492
T++ V + +S+ V + + +S+ ++ S + + ++ + ++ T +
Sbjct: 829 TSSTVVNTSTPITSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 888
Query: 491 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSAC 312
T+ V S + S+ +TSS S+P+ ++ +L +T+S G +
Sbjct: 889 TSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTGLNTSTPI 948
Query: 311 TVASSXLRPMRRLASNIVLWGSSP 240
T +SS L + S+ VL S+P
Sbjct: 949 T-SSSVLNSSTPITSSTVLNSSTP 971
Score = 25.8 bits (54), Expect = 6.4
Identities = 28/144 (19%), Positives = 63/144 (43%)
Frame = -2
Query: 671 TAAEVKDKYISFSSTLFVKTVSNRSSNRFIDDSENVQARDGTCIFCGLSLRVIEDAGTVM 492
T++ V + +S+ + T + +S+ ++ S + + ++ + ++ T +
Sbjct: 1765 TSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 1824
Query: 491 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSAC 312
T+ V S + S+ +TSS S+P+ ++ +L +T+S +
Sbjct: 1825 TSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPI 1884
Query: 311 TVASSXLRPMRRLASNIVLWGSSP 240
T +SS L + S+ VL S+P
Sbjct: 1885 T-SSSVLNSSTPITSSTVLNSSTP 1907
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +3
Query: 432 AYENEGNCRSLSWQNCAECSHHGSRV 509
+Y N R L W C H GSR+
Sbjct: 266 SYRMSSNVRPLIWVECESIVHSGSRI 291
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = -2
Query: 584 IDDSENVQARDGTCIFCGLSLRVIEDAGTVMTAFCTVLPR*ASAVSFIFVSTMELTSSGK 405
I+DSE+V A + + L+ + ED T P + ++ +S + + K
Sbjct: 2059 IEDSEDVHANSPSVLIVQLTRELEEDEEVDTTVIAPYFPAQKTEHWWLVISDDKTLLAIK 2118
Query: 404 KVLSSPLYATLILGLPPSLTTSK 336
K+ T + +PP++ T K
Sbjct: 2119 KITLGRSLTTKMEFVPPAMGTLK 2141
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 108 TLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRTRWR*TPQHNI 266
T +L S+STG+ T++ T L + PS S+ P T + TP +NI
Sbjct: 282 TSSLTSNSTGK-----TSKTTDLLIAASKKSLPSNSTPSKPNTSFFETPHNNI 329
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.7
Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 11/154 (7%)
Frame = -2
Query: 671 TAAEVKDKYISFSSTLFVKTVSNRSSNRFIDDSENVQARDGTCIFCGLSLRVIEDAGTVM 492
+++ + + S SS L T S S++ I S + F S + +
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST------SSTFSSASTSSPSSISSSI 618
Query: 491 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPL-----------YATLILGLPPSLT 345
++ T+L + S + +S+ + S +LSS + Y++ ++ +L
Sbjct: 619 SSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLV 678
Query: 344 TSKGQCFMSACTVASSXLRPMRRLASNIVLWGSS 243
+S +S+ VASS P+ +S + + +S
Sbjct: 679 SSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSAS 712
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -1
Query: 552 WYLHLLWLVFESH*RRGNRDDCILHSFAKISFGSFLHFRKHHGTDFLGEKGFVF-TLICY 376
WY H+ W++ + RR R D + ++ F+ F H F+F +L C
Sbjct: 168 WYAHVGWMIILQNPRRIGRSD-----VSDLNSDPFVMFNHRHFLPIASFMAFIFPSLFCG 222
Query: 375 L 373
L
Sbjct: 223 L 223
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 350 LTTSKGQCFMSACTVASSXLRPMRRLASNIVLWGSSPPGSWRHL 219
L S+ + ++S V +RP + + +IV+ GS++H+
Sbjct: 1173 LNASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHI 1216
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 161 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 3
G W SP S + H ++++ +F +RVL C+ L K +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,891
Number of Sequences: 5004
Number of extensions: 69863
Number of successful extensions: 264
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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