Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20998
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   3.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.9  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   7.8  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 529 TTMNTAEGNTQQSFQLSSTLDIFQQY 452
           TT N+ EG+ Q++   +++ D +Q Y
Sbjct: 162 TTGNSGEGSLQENRYYNNSPDQYQSY 187


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 507 PSAVFIVVDNKKMVQHLDSPAIKVHKYSDG 596
           PSAV +++D  K  ++L +   ++H    G
Sbjct: 742 PSAVLLLIDLMKKNRNLGAACGRIHPVGSG 771


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 507 PSAVFIVVDNKKMVQHLDSPAIKVHKYSDG 596
           PSAV +++D  K  ++L +   ++H    G
Sbjct: 742 PSAVLLLIDLMKKNRNLGAACGRIHPVGSG 771


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 507 PSAVFIVVDNKKMVQHLDSPAIKVHKYSDG 596
           PSAV +++D  K  ++L +   ++H    G
Sbjct: 742 PSAVLLLIDLMKKNRNLGAACGRIHPVGSG 771


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 507 PSAVFIVVDNKKMVQHLDSPAIKVHKYSDG 596
           PSAV +++D  K  ++L +   ++H    G
Sbjct: 742 PSAVLLLIDLMKKNRNLGAACGRIHPVGSG 771


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 687 HALHLFEEDARQSRGRMVIGKQLKIPLVSICHLNIY 580
           H+++L EED ++     + GK    P     HL  +
Sbjct: 237 HSINLLEEDNQKPNVCRICGKSYARPSTLKTHLRTH 272


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 320 IASTISKLWFLP 285
           +A+T +K WFLP
Sbjct: 102 VATTKTKAWFLP 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,001
Number of Sequences: 336
Number of extensions: 3645
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)