Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20998
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   2.1  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    27   2.8  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   4.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.5  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   8.5  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 310  RYLNFGSCHLP*SFRHQQEHTIHSTV 233
            R   FGSCH+P S RH+    + S +
Sbjct: 1038 RAKGFGSCHVPNSLRHKMNKVMLSVL 1063


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = -2

Query: 516 QQKEILNNLFSYLQP---WT---SFNNIITEVLAGCIVTCYHTVF*LSY 388
           QQK  L    +Y  P   W    S  NII +VLAGC   C      LS+
Sbjct: 50  QQKPSLVRRINYYIPVLHWLPNYSLRNIIWDVLAGCSTACLSVPIALSF 98


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 546 PFFCYPPQ*TQQKEILNNLFSYLQP 472
           P + + P+ T++KE+ NNLF    P
Sbjct: 875 PSYFFSPEDTEEKELWNNLFEDWYP 899


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 519  TQQKEILNNLFSYLQPWTS 463
            T  + ++ NL+ Y+QPW S
Sbjct: 1383 TNGEHLIPNLYRYIQPWES 1401


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 596 QMETKGIFNCFPITIRPR 649
           ++E  GIF C P+ + PR
Sbjct: 409 RIEVTGIFRCVPVRLNPR 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,649
Number of Sequences: 5004
Number of extensions: 56724
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)