Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20998
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0108 - 11340504-11340680,11341580-11341665,11341784-113418...    40   0.003
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974...    29   2.9  
04_03_0094 - 11113279-11114469                                         29   5.1  
04_03_0093 - 11085882-11087339                                         28   8.8  

>04_03_0108 -
           11340504-11340680,11341580-11341665,11341784-11341827,
           11342339-11342428,11343762-11343928,11343986-11344010,
           11344636-11344797,11345376-11345422,11345926-11345985,
           11346094-11346465
          Length = 409

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 301 LDIVDAIPLFHHSHYVS--PMAEVALTQIETIAQSENRVIAGYYAA 432
           + I DA+PL HH H++   P  E+ALT +E    ++   + GYY A
Sbjct: 48  VSIADAVPLSHHPHHLPLLPTLELALTLVEDHFAAQGLAVVGYYHA 93



 Score = 32.3 bits (70), Expect = 0.41
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 194 AYAKIILHAAKYPHCAVNGVLL 259
           AY K+ LHA K+P  AVNG+L+
Sbjct: 13  AYVKLALHALKHPAAAVNGLLV 34


>01_06_1760 -
           39697079-39697162,39697280-39697340,39697415-39697479,
           39697579-39697860,39697938-39698012,39698121-39698195,
           39698343-39698399,39698653-39698726,39698912-39699055,
           39699608-39699662,39700027-39700149,39700276-39700320,
           39701068-39701160,39701249-39701662
          Length = 548

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +1

Query: 388 IAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYFL----LLCSLWWITKKWFNI 555
           +++  +++  G +  C+      +    G   AE++ ++ L    L+ S WWI   W ++
Sbjct: 226 VSEKSSQICTGVHCKCQQLLIGGISIMAGKLTAEQLTKFILYAEWLILSTWWIGDNWSSL 285


>04_03_0094 - 11113279-11114469
          Length = 396

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = +1

Query: 352 PMAEVALTQIETI----AQSENRVIAGYYAACENFRDNIVERCPGLK---IAEKIVEYFL 510
           P   V++  +ET+      +E+  +    + C N  D  +E+CP +K   +A   ++ F 
Sbjct: 177 PAGGVSMPSLETLFLKRIMAEDGAVQRLISGCPNIADLTLEQCPSVKRLVVASPRLDSFA 236

Query: 511 LLC 519
           ++C
Sbjct: 237 MIC 239


>04_03_0093 - 11085882-11087339
          Length = 485

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 355 MAEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPG---LKIAEKIVEYFLLLC 519
           M  + +  ++ I  + +  +    + C N  D  +E+CP    L +A   +E F ++C
Sbjct: 173 MPSLEILSLKRIMATTDEAVQQLVSGCPNLADLTLEQCPSVADLVVASPRLESFAMIC 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,804,929
Number of Sequences: 37544
Number of extensions: 335449
Number of successful extensions: 805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)