Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20998
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-4|CAB02093.1|  196|Caenorhabditis elegans Hypothetical pr...    31   0.85 
U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    28   6.0  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    28   6.0  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    28   6.0  
AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z79754-4|CAB02093.1|  196|Caenorhabditis elegans Hypothetical
           protein F25H2.4 protein.
          Length = 196

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = +3

Query: 510 SAVFIVVDNKKMVQHLDSPAIKVHKYSDGKWRPRESLIVFQSPYVLETVSHLLQKGVERD 689
           +A+ + V N+++V   +   +  ++     W+  E+  +FQ    L  +  ++QK + R+
Sbjct: 107 AAILVQVMNERLVSDCEQDRLVAYEKDGDSWK--ETKTIFQGSNFLRGLQAVIQKKLYRE 164

Query: 690 LVDF 701
           L DF
Sbjct: 165 LSDF 168


>U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical
           protein F19C7.8a protein.
          Length = 431

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 530 HHNEHSRRKYSTIFSAIFNPGH 465
           HHN H+R     I SAI+ P H
Sbjct: 71  HHNPHARLSQPDIHSAIYRPHH 92


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
            protein 104, isoforma protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 594  GKWRPRESLIVFQSPYVLETVSHLLQKGVER 686
            G+WRPR   ++F+  + LE ++ L Q  VER
Sbjct: 1280 GQWRPRGDSLIFEHQWELEKLTRLQQ--VER 1308


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
            protein 104, isoformb protein.
          Length = 1628

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 594  GKWRPRESLIVFQSPYVLETVSHLLQKGVER 686
            G+WRPR   ++F+  + LE ++ L Q  VER
Sbjct: 1324 GQWRPRGDSLIFEHQWELEKLTRLQQ--VER 1352


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
            protein protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 594  GKWRPRESLIVFQSPYVLETVSHLLQKGVER 686
            G+WRPR   ++F+  + LE ++ L Q  VER
Sbjct: 1280 GQWRPRGDSLIFEHQWELEKLTRLQQ--VER 1308


>AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical
           protein Y54E5A.7 protein.
          Length = 622

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 358 AEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLKIAEKIVEYF 507
           A   L + E   + E  +   YYA  +   D I++   G +I EKI +YF
Sbjct: 261 ALATLQKFEETTKPEVPIDHEYYAQRKEITDMILKAARGAEIHEKIEKYF 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,882,618
Number of Sequences: 27780
Number of extensions: 312717
Number of successful extensions: 824
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)