Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20998
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55940.1 68418.m06977 expressed protein contains Pfam PF03665...    42   3e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28...    27   9.8  

>At5g55940.1 68418.m06977 expressed protein contains Pfam PF03665:
           Uncharacterised protein family (UPF0172)
          Length = 208

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +1

Query: 301 LDIVDAIPLFHHSHYVSPMAEVALTQIETIAQSENRVIAGYYAACENFRDNIVERCPGLK 480
           ++I D++PLFH +  + P  E++L  IE    ++   I GY+ A E F D  VE C   K
Sbjct: 49  VEISDSVPLFHSNLALLPPLEISLIMIEEHYVAQGLSIVGYFHANERFDD--VELCGVAK 106

Query: 481 -IAEKIVEYF 507
            I + I  YF
Sbjct: 107 NIGDHISRYF 116



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 182 IETGAYAKIILHAAKYPHCAVNGVLL 259
           I   AY K++LH+ ++   AVNGVL+
Sbjct: 13  ISQNAYIKLVLHSLRHKTAAVNGVLV 38


>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
           nearly identical to SC35-like splicing factor SCL28, 28
           kD [Arabidopsis thaliana] GI:9843655; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 236

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 333 PQPLRLTNGRSSTHTD*NHSSIRKP 407
           PQ +R TNG S  H D   +S R P
Sbjct: 130 PQEMRTTNGTSGRHGDYKRTSHRSP 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,765,995
Number of Sequences: 28952
Number of extensions: 283384
Number of successful extensions: 633
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)