Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20996
         (634 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7NY61 Cluster: Chromosome chr6 scaffold_3, whole genom...    34   3.3  
UniRef50_Q9VZX7 Cluster: CG1241-PA; n=9; Sophophora|Rep: CG1241-...    33   7.5  

>UniRef50_A7NY61 Cluster: Chromosome chr6 scaffold_3, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr6 scaffold_3, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 805

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -1

Query: 454 IKRICEQLIFVTRQQKKXKFIKNLVVFSDHHRISIVG*RLVTTNSRNFRAS 302
           ++  C+ L+ V R   + +F+  L  +S+H  +  VG  LVTT S+  +AS
Sbjct: 729 MENTCD-LVMVGRSHGQSQFMSELTKYSEHRELGTVGEVLVTTYSKGSKAS 778


>UniRef50_Q9VZX7 Cluster: CG1241-PA; n=9; Sophophora|Rep: CG1241-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 1906

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 5   LWPDYDFSVDLEEELTRMNINTTAPSPVENKLKLGLDKIIEDIQNILKRKTAYLKGLILN 184
           +W     S+ + EE  +  ++   P    N   +GL+K  E I N+L R  A L    LN
Sbjct: 119 MWSSVSSSMQMAEECMKQ-VDDDVPFLNHNNALIGLEKFAETIDNVLNRIRAKLTNTTLN 177


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,087,270
Number of Sequences: 1657284
Number of extensions: 9346916
Number of successful extensions: 20030
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20030
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)