Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20996
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   2.3  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    26   5.2  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   9.1  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 101 KLGLDKIIEDIQNILKRKTAYLKGLILNT 187
           K G+DKI +D+ +I+KR+   + G +  T
Sbjct: 271 KFGMDKIDDDMVSIIKRRIYDMAGTVRET 299


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 32  DLEEELTRMNINTTAPSPVENKLKLGLDKII 124
           D+ E+L ++ I      P+EN+++  +DK++
Sbjct: 61  DVVEKLVQLRIEIEKIRPLENRIQYSVDKLL 91


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 11  PDYDFSVD-LEEELTRMNINTTAPSPVENKLKLGLDKIIEDIQNILKRKTAYL 166
           P + FS D L+  +T  + +TT  S +EN    GL K    ++NI+ ++   L
Sbjct: 589 PLHQFSTDILKVGITDSSTDTTESSELENSELTGLRKGKRRMKNIIVQELQQL 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,557
Number of Sequences: 5004
Number of extensions: 43204
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)