Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20996
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1287 - 35459419-35459955,35460043-35460966,35461881-354622... 30 1.8
02_02_0723 - 13341390-13342025 30 1.8
06_03_0300 + 19299378-19299688,19299839-19300268 29 3.1
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 29 4.1
06_03_0049 + 15961706-15962017,15962952-15963851,15964769-159649... 28 5.4
02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090 28 7.1
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 28 7.1
07_03_0472 - 18519169-18519285,18519561-18519671,18520689-185208... 27 9.4
06_03_0225 - 18413668-18413751,18414641-18415493,18417497-18417516 27 9.4
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 27 9.4
>02_05_1287 -
35459419-35459955,35460043-35460966,35461881-35462268,
35463645-35463748,35464740-35464928,35465231-35465362
Length = 757
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 461 GYYKTNL*TVNFRHASTKKKXIYQKPCGV 375
G YK TV+F++ +TKKK Y+ GV
Sbjct: 30 GRYKAEATTVDFKNKNTKKKPFYRLDAGV 58
>02_02_0723 - 13341390-13342025
Length = 211
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 249 FIYRVCGDHSLRRCLVLLEARKFRE 323
++YRVC D LRRC+ + E K E
Sbjct: 46 YLYRVCSDVLLRRCVPVAEGIKITE 70
>06_03_0300 + 19299378-19299688,19299839-19300268
Length = 246
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 249 FIYRVCGDHSLRRCLVLLEARKFRE 323
++YRVC D LRRC+ + E K E
Sbjct: 59 YLYRVCSDGLLRRCVPVDEGMKIIE 83
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 20 DFSVDLEEELTRMNINTTAPSPVENKLKLGLDKIIED 130
D S ++ E R+ T+ SP+ENKL+ +D ++E+
Sbjct: 773 DESEKVKAEELRLPAVATSSSPLENKLRKDIDTLLEE 809
>06_03_0049 +
15961706-15962017,15962952-15963851,15964769-15964913,
15964969-15965705
Length = 697
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 249 FIYRVCGDHSLRRCLVLLEARKFRE 323
++YRVC D LRRC+ E K E
Sbjct: 43 YLYRVCSDGLLRRCVPTEEGLKIIE 67
>02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090
Length = 625
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 249 FIYRVCGDHSLRRCLVLLEARKFRE 323
++YRVC D LRRC+ E K E
Sbjct: 44 YLYRVCSDGLLRRCVPTDEGLKIIE 68
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 26 SVDLEEELTRMNINTTAPSPVENKLKLGLDKIIEDIQNILKRKTAYLKGL 175
S++L+EE + + K++ +DKI D+ NI+ +K Y + L
Sbjct: 43 SIELKEETKGKESHVRQTAEYRRKVEAEMDKICCDVINIIDKKGDYYRYL 92
>07_03_0472 -
18519169-18519285,18519561-18519671,18520689-18520816,
18520965-18521147,18521337-18521427
Length = 209
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/75 (22%), Positives = 30/75 (40%)
Frame = -1
Query: 526 LRVSVPAQTYPHYVNKCSRSLPAIIKRICEQLIFVTRQQKKXKFIKNLVVFSDHHRISIV 347
L+V PA+ P Y++ C P +RI + Q ++ + +S +R +
Sbjct: 133 LKVKPPAEARPRYLDTCDGPAPTPTRRIPLSGASASPSQMDQSWMYGIDSWSQEYRDGVA 192
Query: 346 G*RLVTTNSRNFRAS 302
+ N R R S
Sbjct: 193 EFLRIVDNDRIIRMS 207
>06_03_0225 - 18413668-18413751,18414641-18415493,18417497-18417516
Length = 318
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 249 FIYRVCGDHSLRRCLVLLEARKFRE 323
++YRVC D LRRC+ + + K E
Sbjct: 131 YLYRVCSDGLLRRCVPVDKGMKIIE 155
>02_01_0014 -
87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 527 FARECTS-ANLPPLRQQMLKKFAGYYKTNL*TVNFRHASTKKKXIYQK 387
F +E S ANLP LRQQ L+++ + L +++ T + QK
Sbjct: 735 FGKERVSEANLPKLRQQALRRYKSFISVAL-SIDHERNETPMAFLVQK 781
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,589,763
Number of Sequences: 37544
Number of extensions: 232316
Number of successful extensions: 465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -