Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20996
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z68116-2|CAA92173.1|  243|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical
           protein M7.3 protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = +2

Query: 2   DLWPDYDFSVDLEEELTR--MNINTTAPS----PVENKLKLGLDKIIEDIQNI 142
           DLW  Y FS  L  +L +  M+++T  PS    P+ N  + GL  + E+ + +
Sbjct: 544 DLWSGYGFSSSLPADLLKGMMDLSTNEPSTNGPPMMNHSQRGLCSVREEDEEL 596


>Z68116-2|CAA92173.1|  243|Caenorhabditis elegans Hypothetical
           protein F42F12.3 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 206 ILVITSTVRFRLYIVHLQGVWRSFFK 283
           +L++ + V F  Y   LQGVW S+++
Sbjct: 101 LLIVAAAVAFCTYNGTLQGVWNSYYQ 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,542,534
Number of Sequences: 27780
Number of extensions: 235710
Number of successful extensions: 465
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)