Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20995
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_33588| Best HMM Match : VRP3 (HMM E-Value=6.4)                      28   8.8  

>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 474 AWVFSNYFYQFFGHYLVF 421
           AW++SNYF  F  H+L F
Sbjct: 364 AWMYSNYFKDFNHHFLSF 381


>SB_33588| Best HMM Match : VRP3 (HMM E-Value=6.4)
          Length = 372

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +3

Query: 249 IDARYDAEMCCTTLVIYRQTEPQRYKYANLCRGVRTL 359
           ++  +   + CTT+++ ++T+ Q++ Y    RG+R +
Sbjct: 4   VNVSFTVMLRCTTIILNKKTQHQQFDYEQNERGLRNV 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,047,720
Number of Sequences: 59808
Number of extensions: 346765
Number of successful extensions: 619
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)