Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20995
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z66520-8|CAE17837.1|  357|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 470 GYFLTISINFSGII*YFNTHSLGH*NKICKKLQRLTSKRPNAATEVRVFIALGLCLTVYY 291
           G+F+T+   F  +    N +S     +I K ++   S+RPNA   ++ + +L LCL  Y 
Sbjct: 352 GFFITLGAAFCCL----NDNSEPRIGEIVKAIR---SQRPNAVESIKQYASLYLCLLYYI 404

Query: 290 QSSTT 276
           +   T
Sbjct: 405 KKKIT 409


>Z66520-8|CAE17837.1|  357|Caenorhabditis elegans Hypothetical
           protein F49E12.12 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 334 TSVAALGRFDVRRCN--FLQILF*CPSECVLKY*IMPEKLIEIVRKYPCLYHTTYESLNI 507
           T+   L  +DV R N   L+ +F C +       ++ +  I  +  YPCLYHT + +   
Sbjct: 223 TTYTYLESYDVNRKNSRVLERVF-CIALFAFCLPVVCKDYISFLYTYPCLYHTEWPAAIC 281

Query: 508 *YF*IFTLL 534
            Y  I T++
Sbjct: 282 EYICIITII 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,296,850
Number of Sequences: 27780
Number of extensions: 271768
Number of successful extensions: 563
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)