Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20995
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14096.1 68417.m02176 F-box family protein contains F-box dom...    32   0.44 
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    28   7.2  

>At4g14096.1 68417.m02176 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 468

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = -2

Query: 566 QRIRQIIVPSDSSV-KI*KY*MLSDSYVVWYKH-GYFLTISINFSGII*YFNTHSLGH*N 393
           + IR  +  S   V KI K+  +SD      +   YFL    N   +I Y+NT S+    
Sbjct: 368 EEIRSCLASSPVKVIKILKFGEISDDMEKQREQIKYFLETMPNLEKMILYYNTTSVEDVT 427

Query: 392 KICKKLQRLTSKRPNAATEVRV 327
           ++  +LQRL SK  ++   V++
Sbjct: 428 EVSSRLQRLVSKLASSTCIVQL 449


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
            to CREB-binding protein GB:AAC51770 GI:2443859 from [Homo
            sapiens]; contains Pfam PF02135: TAZ zinc finger profile;
            contains Pfam PF00569: Zinc finger, ZZ type domain;
            identical to histone acetyltransferase HAC4 (GI:14794966)
            {Arabidopsis thaliana}
          Length = 1456

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 64   FYYNKQCYIFCNICKSKSYHYVDLSRCK 147
            F++N+Q ++  N+C+  +Y Y  L R K
Sbjct: 1239 FFHNRQAFL--NLCQGNNYQYETLRRAK 1264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,084
Number of Sequences: 28952
Number of extensions: 232492
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)