Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20994
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0UMU6 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_Q7FA47 Cluster: OSJNBa0028M15.2 protein; n=1; Oryza sat...    33   5.1  
UniRef50_Q54K98 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q9JFN3 Cluster: RNA polymerase; n=1; Tupaia paramyxovir...    33   8.8  

>UniRef50_Q0UMU6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 399

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +2

Query: 131 WTPPASTEQDFTPSY*KCSKCWIPP-VSIKATMTGLDPTEVYYVNMCCGRRRICTGSSPA 307
           WTPP       TP + K   C +PP  S K+      P ++ +VN    R   C    P 
Sbjct: 236 WTPPPGRTIPHTPFFPKPQPCLLPPRSSAKSCSPPASPEKIQHVNAHLVRAAACQHHIPG 295

Query: 308 ETS 316
            T+
Sbjct: 296 VTT 298


>UniRef50_Q7FA47 Cluster: OSJNBa0028M15.2 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: OSJNBa0028M15.2 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 73

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 217 SNHDRPGPHRSVLCQHVLRPEEDLHWLESGGNVFVQKEKVSHRLPALLIDNNRACK 384
           +N  RPG H S+ C H L P +   W   G  +   KE+++  +P++L  ++ A +
Sbjct: 8   ANSLRPGLHLSIHCSHSLLPSQSYKWSGWGSRIDHLKEELT-GVPSILPRSDEALR 62


>UniRef50_Q54K98 Cluster: Putative uncharacterized protein; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1312

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = +3

Query: 132  GPHRPVLNKTLPLLIRN-AQSVGSHRSVLKQP 224
            G  +  LN+TLPLLI+N +Q V S +S+++QP
Sbjct: 1164 GNFKVQLNETLPLLIKNRSQKVNSIKSIIEQP 1195


>UniRef50_Q9JFN3 Cluster: RNA polymerase; n=1; Tupaia
           paramyxovirus|Rep: RNA polymerase - Tupaia paramyxovirus
           (TPMV)
          Length = 2270

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +2

Query: 464 YFDYLETTSLVKFKYNADSRYATLRPTMIEFWQLQQIIF-SVNFNQYSLVCKLCND*H*Y 640
           Y D +E   +V+   + D RY  L P  +  W L   +F  +  N Y+++ ++      Y
Sbjct: 239 YCDVIEGRLMVETTMSLDKRYGPLYPRAMRLWDLFDSLFVDLGNNTYNIISQIEPLALSY 298

Query: 641 LDIR--ISLIAFVYCNHKL 691
           L +R    ++A  + NH L
Sbjct: 299 LQLRDESGILAGAFLNHTL 317


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,074,964
Number of Sequences: 1657284
Number of extensions: 16380080
Number of successful extensions: 34319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34294
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)