Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20994
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0083 - 10959091-10959222,10959318-10959501,10959935-109600...    29   2.7  
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990...    29   4.7  
10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111     28   8.1  
07_03_1390 + 26217623-26218370,26218435-26218934                       28   8.1  
04_04_1404 + 33302080-33303341,33303435-33305307                       28   8.1  

>01_02_0083 -
           10959091-10959222,10959318-10959501,10959935-10960056,
           10960143-10960472
          Length = 255

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 46  RVTILCCLCCHGYCHPGPDRSLLTMEL 126
           R  IL C  CH +C P P  SLL+  +
Sbjct: 148 RFIILWCFPCHFFCFPFPPYSLLSFRI 174


>03_02_0619 +
           9904405-9904586,9905315-9906764,9907320-9907509,
           9909578-9910164
          Length = 802

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 18  SAVPKSRRGTCYDLVLSVLSWILSPW 95
           SA P+  R   +DL  +VLS IL+PW
Sbjct: 696 SAWPRPERRLLFDLANTVLSEILAPW 721


>10_08_0389 + 17465328-17465712,17465855-17465908,17466061-17468111
          Length = 829

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +3

Query: 135 PHRPVLNKTLPLLIRNAQSVGSHRSVLKQP*PAWTPPKCTMSTCAAA 275
           P RP L   LPLL+     +   RS  + P PAW P     S  AAA
Sbjct: 2   PFRPRL--PLPLLLLLLPHLRRRRSSPRPPVPAWRPLSYYPSAAAAA 46


>07_03_1390 + 26217623-26218370,26218435-26218934
          Length = 415

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 545 LLVEVLRIWNQHYI*ILLRRLSQDNRSISIHFRMALSNQLISMQ*PCHVPP-CSYLQAR 372
           +L E +R+    Y  +L ++ SQD++S+S +    L N  +S   P  +PP   YL AR
Sbjct: 312 ILKEQMRMQLLEYK-LLRKKPSQDSKSVSTNADWKLENLWVSQPTPSMLPPNIVYLIAR 369


>04_04_1404 + 33302080-33303341,33303435-33305307
          Length = 1044

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 63  LSVLSWILSPWT-RPVSINHGAYSGPHRPVLNKTLPLLIR 179
           L +  W  +  +  P S+  G Y  P  PVLN+ +P ++R
Sbjct: 114 LQLFRWFFTVQSVSPPSVVGGCYFQPRGPVLNRYIPCVLR 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,760,283
Number of Sequences: 37544
Number of extensions: 480086
Number of successful extensions: 1030
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)