Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20994
         (695 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134825-2|AAD54488.1|  234|Homo sapiens small nuclear ribonucle...    36   0.18 
AF134825-1|AAD54489.1|  243|Homo sapiens small nuclear ribonucle...    36   0.18 
U88154-1|AAC17709.1| 1021|Homo sapiens proline and glutamic acid...    31   5.2  

>AF134825-2|AAD54488.1|  234|Homo sapiens small nuclear
           ribonucleoprotein B protein.
          Length = 234

 Score = 35.5 bits (78), Expect = 0.18
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 182 CSKCWIPPVSIKATMTGLDPT-EVYYVNMC-CGRRRICTGSSPAET 313
           C  CW  P   +A  TG DPT + Y  + C C   + C GS+P  T
Sbjct: 128 CRTCWASPWGWRAIPTGDDPTRKRYCCSRCSCCHSQYCRGSNPVPT 173


>AF134825-1|AAD54489.1|  243|Homo sapiens small nuclear
           ribonucleoprotein B' protein.
          Length = 243

 Score = 35.5 bits (78), Expect = 0.18
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 182 CSKCWIPPVSIKATMTGLDPT-EVYYVNMC-CGRRRICTGSSPAET 313
           C  CW  P   +A  TG DPT + Y  + C C   + C GS+P  T
Sbjct: 128 CRTCWASPWGWRAIPTGDDPTRKRYCCSRCSCCHSQYCRGSNPVPT 173


>U88154-1|AAC17709.1| 1021|Homo sapiens proline and glutamic acid
           rich nuclear protein isoform protein.
          Length = 1021

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 135 PHRPVLNKTLPL-LIRNAQSVGSHRSVLKQP*PAWTPPKCTMSTCAAAG 278
           P  P      P+ L+R  +  G HRS+L+ P P W P     + C +AG
Sbjct: 524 PMGPTCPTPAPVPLLRPHRPSGPHRSILRAPCPQWAPCP-QQAPCPSAG 571


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,796,036
Number of Sequences: 237096
Number of extensions: 2543062
Number of successful extensions: 8792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8789
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)