Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20994
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81114-1|CAB03285.1|  454|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical...    30   1.4  
Z93393-3|CAB54438.2|  388|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z81114-1|CAB03285.1|  454|Caenorhabditis elegans Hypothetical
           protein T04D3.1 protein.
          Length = 454

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/77 (23%), Positives = 28/77 (36%)
 Frame = -3

Query: 570 CCSCQNSIIVGRSVAYLESALYLNFTKEVVSR*SKYFYTFPDGA*QSADFHAMTLSRPSV 391
           C SC   I+         S   +    EV     +Y Y+F  G  Q  D+  +  S    
Sbjct: 65  CSSCAVKILEDHLSPMYASGSVIFMRNEVTQEVEQYVYSFETGGFQQVDYPELVYSAEKF 124

Query: 390 FIFTGAVVVDQQSGKSV 340
              +  V+++   GK V
Sbjct: 125 TESSFIVMIENSDGKKV 141


>U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical
           protein T19C3.4 protein.
          Length = 229

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 51  YDLVLSVLSWILSPWTRPVSINHGAYSGPHRPVLNKTLPLLIRNAQS 191
           + L +  + W+LSPWT+  SI +  +  P      K +  L+ +A+S
Sbjct: 66  FQLKIVFIFWLLSPWTKGASILYRKWVHPTLNRHEKDIDALLESAKS 112


>AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.2 protein.
          Length = 483

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 260 NMCCGRRRICTGSSPAETSSCR 325
           N CCG+R +  GSS   T +CR
Sbjct: 215 NRCCGKRDVFDGSSSNRTQTCR 236



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 260 NMCCGRRRICTGSSPAETSSCR 325
           N CC +R +  GSS   T +CR
Sbjct: 257 NRCCAKRDVIDGSSSNRTQTCR 278



 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 260 NMCCGRRRICTGSSPAETSSCR 325
           N CC +R +  GSS   T +CR
Sbjct: 341 NRCCAKRDLIDGSSSNRTQTCR 362


>Z93393-3|CAB54438.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48E1B.2b protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 42  GTCYDLVLSVLSWILSPWTRPVSINHGAYSGPHRPVLNKTLPLLIRNAQSVG 197
           G C D+VLS + W++    R V+++  A++  ++ +  +  P+L  +A   G
Sbjct: 294 GGCCDIVLSSIGWVMVTSERDVTLS--AFTPANKGITARIQPILPYSASLRG 343


>Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical
           protein Y48E1B.2a protein.
          Length = 890

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 42  GTCYDLVLSVLSWILSPWTRPVSINHGAYSGPHRPVLNKTLPLLIRNAQSVG 197
           G C D+VLS + W++    R V+++  A++  ++ +  +  P+L  +A   G
Sbjct: 796 GGCCDIVLSSIGWVMVTSERDVTLS--AFTPANKGITARIQPILPYSASLRG 845


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,223,350
Number of Sequences: 27780
Number of extensions: 390614
Number of successful extensions: 810
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)