Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20994
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21250.1 68416.m02685 ABC transporter family protein similar ...    29   3.9  
At1g29740.1 68414.m03636 leucine-rich repeat family protein / pr...    27   9.0  

>At3g21250.1 68416.m02685 ABC transporter family protein similar to
            MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
            thaliana]
          Length = 1294

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 31/122 (25%), Positives = 51/122 (41%)
 Frame = +1

Query: 31   NLAAERVTILCCLCCHGYCHPGPDRSLLTMELTLDPTGQY*TRLYPFLLEMLKVLDPTGQ 210
            N+      +L  L   GY  PG     L+  LTL  T  + TR Y  L   +  ++   Q
Sbjct: 959  NVTLFTCALLLILIPKGYIAPGLVGLSLSYALTLTQTQVFLTRWYCTLSNSIISVERIKQ 1018

Query: 211  Y*SNHDRPGPHRSVLCQHVLRPEEDLHWLESGGNVFVQKEKVSHRLPALLIDNNRACKYE 390
            Y +  + P    +++     RP     W  S G + +Q+ K+ +R  A L+    +C + 
Sbjct: 1019 YMNIPEEP---PAIIDDK--RPPSS--W-PSNGTIHLQELKIRYRPNAPLVLKGISCTFR 1070

Query: 391  HG 396
             G
Sbjct: 1071 EG 1072


>At1g29740.1 68414.m03636 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1049

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 467 FDYLETTSLVKFKYNADSRYATLRPTMIE 553
           FD +E   ++K      S+  TLRPTM E
Sbjct: 885 FDVMEAERMIKVSLLCSSKSPTLRPTMSE 913


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,148,162
Number of Sequences: 28952
Number of extensions: 361919
Number of successful extensions: 717
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)