Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20993
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   2.0  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   8.1  
SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 231  LDEALNDKDSYRDSSSVHLAR 293
            LDEA NDK+S    S+VHL R
Sbjct: 1169 LDEAKNDKESRYVPSAVHLVR 1189


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 690 ISILTNKKINTFKLVPNLNHFISTFTNLGGICTIHKIFHYNTLWPTRL 547
           + I+ NK I  F      N  +    + GGI T+    +Y+T++   L
Sbjct: 259 LEIIANKGIEPFYRGELTNSMVKFIQDNGGIVTVEDFGNYSTVFADAL 306


>SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 627 ISTFTNLGGICTIHKIFHYNTLWPTRLVGI 538
           I+TF +L  + TI  I H+ T+W T  VGI
Sbjct: 46  IATFRSL--LNTIPSIPHWRTMWGTVRVGI 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,509
Number of Sequences: 5004
Number of extensions: 52503
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)