Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20993
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0815 + 25458171-25458423,25458649-25458683                       29   2.8  
12_02_0776 - 23064167-23064239,23065214-23065518,23065614-230657...    29   3.7  
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431...    29   3.7  
05_06_0064 + 25297268-25297612,25298150-25298237,25299608-252997...    29   4.8  
08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111...    28   6.4  
08_02_0574 - 18867623-18868033,18869751-18870209                       28   6.4  

>01_05_0815 + 25458171-25458423,25458649-25458683
          Length = 95

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 359 PQCSPQETKQIQKTLSYVQRNFPQHWAKLVRQYAG 463
           PQ + ++ +Q ++ L+   R+ P+ W  + R  AG
Sbjct: 12  PQWTARQNEQFERALAVYDRDTPERWHNIARAVAG 46


>12_02_0776 -
           23064167-23064239,23065214-23065518,23065614-23065727,
           23065812-23065918,23065997-23066143,23066227-23066326,
           23066421-23066522,23066702-23066776,23066973-23067152,
           23067266-23067355,23067435-23067559,23067847-23067910,
           23067993-23068197,23068818-23068966
          Length = 611

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -1

Query: 252 CHLVLHPKLCL*PGADSVAPHRQPPAR 172
           CHLV+ P L L P A S  PH  PP R
Sbjct: 25  CHLVV-PGLRLRPPASSSPPHAAPPLR 50


>01_07_0359 -
           43042675-43042758,43042956-43043024,43043099-43043159,
           43043260-43043768,43044545-43045153,43045697-43045972,
           43046581-43046769,43047006-43047116,43047621-43047908,
           43047990-43048041,43048648-43048824,43049249-43049314,
           43049675-43049929,43050071-43050577,43050807-43050886,
           43050974-43051207
          Length = 1188

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 263 QRQLKCALGEAPCDPIGKRLKTLAPLVLRGACPQCSPQETKQIQKTLSYVQRNFPQHWAK 442
           Q  L CA   A C+P+G +  + A      A P  +   +  + K+L+YV+    +H  K
Sbjct: 115 QIDLFCANTIAKCEPLGTQRSSSASPHSSVAAPPITNFASPSLVKSLNYVRSLVARHIPK 174

Query: 443 LVRQYAG 463
           L  Q  G
Sbjct: 175 LSFQPIG 181


>05_06_0064 +
           25297268-25297612,25298150-25298237,25299608-25299719,
           25300417-25300972
          Length = 366

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 260 IQRQLKCALGEAPC-DPIGKRLKTLAPLVLRGACPQ 364
           +Q  ++C +G++   DP+ K + T +PL LR   P+
Sbjct: 247 MQCNIQCPVGQSTASDPLKKLISTSSPLALRNKAPR 282


>08_02_0967 -
           23110154-23110240,23110620-23110673,23111010-23111177,
           23111432-23111534,23111664-23111988,23112091-23112181
          Length = 275

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 320 LKTLAPLVLRGACPQCSPQETKQIQKTLSYVQ--RNFPQHWAKLVRQYA 460
           L   A L+L  A P    QE    ++  +Y+      P+HW KL  ++A
Sbjct: 9   LLAAASLLLATAVPAARAQEETDHEEEFTYISGDEKGPEHWGKLKPEWA 57


>08_02_0574 - 18867623-18868033,18869751-18870209
          Length = 289

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 27/87 (31%), Positives = 34/87 (39%)
 Frame = -1

Query: 360 GQAPRKTSGARVFKRFPIGSQGASPSAHLSCLCMNPCHLVLHPKLCL*PGADSVAPHRQP 181
           G APR    A  F      S    P    S LC    +    P LCL   A SV P   P
Sbjct: 32  GYAPRYRCDACNFDMHTFCSNLCRP--FYSTLCTKAAYSGFVPSLCLPRAAGSVTPAAIP 89

Query: 180 PARAVLNNSASS*RTWKRSLLLSCTGR 100
            A +  + +AS+  +       +CTGR
Sbjct: 90  CAGS--STTASAPTSTSTRAAPACTGR 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,432,366
Number of Sequences: 37544
Number of extensions: 343795
Number of successful extensions: 714
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)