Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20993
         (714 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021975-1|AAH21975.2|  255|Homo sapiens TSEN2 protein protein.        31   4.1  
BC019582-1|AAH19582.1|  465|Homo sapiens tRNA splicing endonucle...    31   4.1  
BC004211-1|AAH04211.1|  465|Homo sapiens TSEN2 protein protein.        31   4.1  
BC004178-1|AAH04178.1|  465|Homo sapiens TSEN2 protein protein.        31   4.1  
AK074794-1|BAC11213.1|  439|Homo sapiens protein ( Homo sapiens ...    31   4.1  
AY032599-1|AAK39642.1| 1463|Homo sapiens multidrug resistance-as...    31   5.4  
AL359813-2|CAI23217.1| 1492|Homo sapiens ATP-binding cassette, s...    31   5.4  
AK000002-1|BAA92227.1| 1513|Homo sapiens FLJ00002 protein protein.     31   5.4  
D87443-1|BAA13384.2| 1009|Homo sapiens KIAA0254 protein.               30   9.5  
BC031620-1|AAH31620.1|  803|Homo sapiens SNX19 protein protein.        30   9.5  
AF395843-1|AAK73124.1|  992|Homo sapiens SNX19 protein.                30   9.5  

>BC021975-1|AAH21975.2|  255|Homo sapiens TSEN2 protein protein.
          Length = 255

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 227 CVCDLGPILLRRTDNHQHEQS*ITQLHRDERGNDHFYFLARVVSFTDRER 78
           C C    ++L+R  +H+     I  LH  +RG DH Y L         ER
Sbjct: 11  CCCKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSER 60


>BC019582-1|AAH19582.1|  465|Homo sapiens tRNA splicing endonuclease
           2 homolog (S. cerevisiae) protein.
          Length = 465

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 227 CVCDLGPILLRRTDNHQHEQS*ITQLHRDERGNDHFYFLARVVSFTDRER 78
           C C    ++L+R  +H+     I  LH  +RG DH Y L         ER
Sbjct: 221 CCCKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSER 270


>BC004211-1|AAH04211.1|  465|Homo sapiens TSEN2 protein protein.
          Length = 465

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 227 CVCDLGPILLRRTDNHQHEQS*ITQLHRDERGNDHFYFLARVVSFTDRER 78
           C C    ++L+R  +H+     I  LH  +RG DH Y L         ER
Sbjct: 221 CCCKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSER 270


>BC004178-1|AAH04178.1|  465|Homo sapiens TSEN2 protein protein.
          Length = 465

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 227 CVCDLGPILLRRTDNHQHEQS*ITQLHRDERGNDHFYFLARVVSFTDRER 78
           C C    ++L+R  +H+     I  LH  +RG DH Y L         ER
Sbjct: 221 CCCKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSER 270


>AK074794-1|BAC11213.1|  439|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90313 fis, clone NT2RP2001388, weakly similar to
           TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 (EC 3.1.27.9).
           ).
          Length = 439

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 227 CVCDLGPILLRRTDNHQHEQS*ITQLHRDERGNDHFYFLARVVSFTDRER 78
           C C    ++L+R  +H+     I  LH  +RG DH Y L         ER
Sbjct: 221 CCCKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSER 270


>AY032599-1|AAK39642.1| 1463|Homo sapiens multidrug
           resistance-associated protein 7 protein.
          Length = 1463

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 329 LAPLVLRGACPQC-SPQETKQIQKTL--SYVQRNFPQHWAKLVR 451
           LAPL+ RGAC +   PQ+  ++   L  +Y+ R F  HW +  R
Sbjct: 185 LAPLLARGACGELRQPQDICRLPHRLQPTYLARVFQAHWQEGAR 228


>AL359813-2|CAI23217.1| 1492|Homo sapiens ATP-binding cassette,
           sub-family C (CFTR/MRP), member 10 protein.
          Length = 1492

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 329 LAPLVLRGACPQC-SPQETKQIQKTL--SYVQRNFPQHWAKLVR 451
           LAPL+ RGAC +   PQ+  ++   L  +Y+ R F  HW +  R
Sbjct: 229 LAPLLARGACGELRQPQDICRLPHRLQPTYLARVFQAHWQEGAR 272


>AK000002-1|BAA92227.1| 1513|Homo sapiens FLJ00002 protein protein.
          Length = 1513

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 329 LAPLVLRGACPQC-SPQETKQIQKTL--SYVQRNFPQHWAKLVR 451
           LAPL+ RGAC +   PQ+  ++   L  +Y+ R F  HW +  R
Sbjct: 250 LAPLLARGACGELRQPQDICRLPHRLQPTYLARVFQAHWQEGAR 293


>D87443-1|BAA13384.2| 1009|Homo sapiens KIAA0254 protein.
          Length = 1009

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 320 LKTLAPLVLRGACPQCSPQETKQIQKTLSYVQRNFPQHWAKLVRQ 454
           L+   PL     CP+   Q  ++I +T+  + R+F   W + V Q
Sbjct: 96  LERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQ 140


>BC031620-1|AAH31620.1|  803|Homo sapiens SNX19 protein protein.
          Length = 803

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 320 LKTLAPLVLRGACPQCSPQETKQIQKTLSYVQRNFPQHWAKLVRQ 454
           L+   PL     CP+   Q  ++I +T+  + R+F   W + V Q
Sbjct: 79  LERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQ 123


>AF395843-1|AAK73124.1|  992|Homo sapiens SNX19 protein.
          Length = 992

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 320 LKTLAPLVLRGACPQCSPQETKQIQKTLSYVQRNFPQHWAKLVRQ 454
           L+   PL     CP+   Q  ++I +T+  + R+F   W + V Q
Sbjct: 79  LERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQ 123


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,717,451
Number of Sequences: 237096
Number of extensions: 1880515
Number of successful extensions: 3588
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3588
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)