Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20993
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...   127   9e-32
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...   127   9e-32
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    60   2e-11
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    48   7e-08
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    48   7e-08
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    43   3e-06
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    43   3e-06
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.8  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score =  127 bits (307), Expect = 9e-32
 Identities = 51/71 (71%), Positives = 67/71 (94%)
 Frame = +2

Query: 251 QGFIQRQLKCALGEAPCDPIGKRLKTLAPLVLRGACPQCSPQETKQIQKTLSYVQRNFPQ 430
           Q +++RQLKCALGEAPCDP+G+RLK+LAPLVLRGACPQCSP+ET+QI+K LS++QR +P+
Sbjct: 45  QRYLRRQLKCALGEAPCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQRTYPK 104

Query: 431 HWAKLVRQYAG 463
            W+K+V+QYAG
Sbjct: 105 EWSKIVQQYAG 115


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score =  127 bits (307), Expect = 9e-32
 Identities = 51/71 (71%), Positives = 67/71 (94%)
 Frame = +2

Query: 251 QGFIQRQLKCALGEAPCDPIGKRLKTLAPLVLRGACPQCSPQETKQIQKTLSYVQRNFPQ 430
           Q +++RQLKCALGEAPCDP+G+RLK+LAPLVLRGACPQCSP+ET+QI+K LS++QR +P+
Sbjct: 45  QRYLRRQLKCALGEAPCDPVGRRLKSLAPLVLRGACPQCSPEETRQIKKVLSHIQRTYPK 104

Query: 431 HWAKLVRQYAG 463
            W+K+V+QYAG
Sbjct: 105 EWSKIVQQYAG 115


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 60.5 bits (140), Expect = 2e-11
 Identities = 23/67 (34%), Positives = 40/67 (59%)
 Frame = +2

Query: 257 FIQRQLKCALGEAPCDPIGKRLKTLAPLVLRGACPQCSPQETKQIQKTLSYVQRNFPQHW 436
           ++Q+QL C L    CD IGK++K L P VL   C +C+ ++       + ++Q+N+P  W
Sbjct: 32  YVQKQLHCILDRGHCDVIGKKIKELLPEVLNNHCNRCTSRQIGIANTLIPFMQQNYPYEW 91

Query: 437 AKLVRQY 457
             ++R+Y
Sbjct: 92  QLILRRY 98


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 48.4 bits (110), Expect = 7e-08
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +2

Query: 272 LKCALGEAPCDPIGKRLKTLAPLVLRGACPQCSPQETKQIQKTLSYVQRNFPQHWAKLVR 451
           +KC L E PC   G+ LK + P  L   C +C+ ++     K ++Y++   P+ W +L  
Sbjct: 44  IKCMLDEGPCTNEGRELKKILPDALSTGCNKCNEKQKHTANKVVNYLKTKRPKDWERLSA 103

Query: 452 QY 457
           +Y
Sbjct: 104 KY 105


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 48.4 bits (110), Expect = 7e-08
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +2

Query: 272 LKCALGEAPCDPIGKRLKTLAPLVLRGACPQCSPQETKQIQKTLSYVQRNFPQHWAKLVR 451
           +KC L E PC   G+ LK + P  L   C +C+ ++     K ++Y++   P+ W +L  
Sbjct: 44  IKCMLDEGPCTNEGRELKKILPDALSTGCNKCNEKQKHTANKVVNYLKTKRPKDWERLSA 103

Query: 452 QY 457
           +Y
Sbjct: 104 KY 105


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 272 LKCALGEAPCDPIGKRLKTLAPLVLRGACPQCSPQETKQIQKTLSYVQRNFPQHWAKLVR 451
           + C L + PC P    LK   P  L   C  CS ++ K   K + ++  N P+ W  L  
Sbjct: 47  VNCLLDQGPCTPDAAELKRNLPDALENECSPCSEKQKKIADKVVQFLIDNKPEIWVLLEA 106

Query: 452 QY 457
           +Y
Sbjct: 107 KY 108


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 42.7 bits (96), Expect = 3e-06
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 272 LKCALGEAPCDPIGKRLKTLAPLVLRGACPQCSPQETKQIQKTLSYVQRNFPQHWAKLVR 451
           + C L + PC P    LK   P  L   C  CS ++ K   K + ++  N P+ W  L  
Sbjct: 47  VNCLLDQGPCTPDAAELKRNLPDALENECSPCSEKQKKIADKVVQFLIDNKPEIWVLLEA 106

Query: 452 QY 457
           +Y
Sbjct: 107 KY 108


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 131 NDHFYFLARVVSFTDRERVTRI 66
           N+++  L R  +FTD+  +TR+
Sbjct: 625 NNNYINLVRPNTFTDKVNLTRV 646


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,531
Number of Sequences: 438
Number of extensions: 3660
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)