Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20992
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.39
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 29 0.90
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 27 3.6
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 27 3.6
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 26 4.8
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 6.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 6.3
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 6.3
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 6.3
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.39
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +1
Query: 226 NCRRRLDLEYTKSPTADRIMPNSEGTNATQAVF---PVRS---TPSASTMVSSQPLIMAE 387
NC + YT +P + + T +T + PV S T S+ST V+S P+
Sbjct: 472 NCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
Query: 388 GTASPNVTLT 417
T S +V T
Sbjct: 532 CTTSTSVLYT 541
Score = 29.5 bits (63), Expect = 0.51
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Frame = +1
Query: 226 NCRRRLDLEYTKSPTADRIMPNSEGTNATQAVF---PVRS---TPSASTMVSSQPLIMAE 387
NC + YT +P + + T +T + PV S T S+ST V+S P+
Sbjct: 531 NCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Query: 388 GTASPNVTLTPQDLIYKKCISELETLV 468
T S +V T + S T V
Sbjct: 591 CTTSTSVLYTSTPITSPNSTSSSSTQV 617
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 28.7 bits (61), Expect = 0.90
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 217 EKKNCRRRLDLEYTKSPTADRIMPNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEG-T 393
+K R ++ +K+P I PN A A PV++ A VS PL + G T
Sbjct: 491 KKDTPTRDANMRTSKAPYIQNI-PNQFQRRAYSATIPVKNESLAKPSVSPMPLQQSTGKT 549
Query: 394 ASPNVTLTPQDLIYKKCI 447
P ++ Y C+
Sbjct: 550 EVAKRAQFPTNVNYSSCV 567
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +2
Query: 557 ISGERMRIQSLQHPLLRRWQGHISRRIPAYGCSWMED 667
I+G+R + + H L W G++ ++ C W+ +
Sbjct: 282 IAGDRSNVNVIAHELAHSWSGNLVTN-ESWQCFWLNE 317
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 241 IVFCNFSSRPLLQS*KVSRLFNGC--AHGKRHQNKREQV 131
I+FCN ++R L + K++ L C +H K Q+ R +V
Sbjct: 285 IIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRV 323
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 668 GLPSKSSHMREFS*ICVPATDVV 600
GLPS+S + +F VP TDV+
Sbjct: 275 GLPSQSHYQTQFQASVVPRTDVI 297
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 331 EPEIQLVLHLYLLNSALFYLQSDFWY 254
+P+I L L LYL + +LF+L + WY
Sbjct: 556 QPKILLSL-LYLTDLSLFFLDTYLWY 580
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -2
Query: 288 RHYSICSRTFGILQIQSSSAIFLLVRFFKVKRFPDCSM 175
R S+ ++ + Q A F+L +F ++ + DCS+
Sbjct: 673 RMLSVINQQLADIPFQKRDAEFILPSYFDIRLYNDCSL 710
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 317 ACVAFVPSEFGIILSAVGLLVY 252
A VA +PSE+G+ S VG+ +Y
Sbjct: 143 AKVATLPSEYGLYSSFVGVAIY 164
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 106 LPINYEE*LLVRVYFDVVYRVHNH*TIWKPFNFEEADEKKNCRRRLDLEYTKSPTADRI 282
+P+N E +V + + Y + PF+F DE K+ D + KS R+
Sbjct: 1038 IPLNKRELKMVYSWLQLFYDFFRNFQDIAPFDFLNTDEYKSVMAIKDYYFVKSKDVKRV 1096
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,297
Number of Sequences: 5004
Number of extensions: 68100
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -