Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20992
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553...    29   2.9  
01_01_0403 - 3051317-3052120                                           29   2.9  
05_03_0373 - 13194723-13195847,13196219-13196809                       29   5.0  
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660     28   6.6  
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735...    28   6.6  

>09_02_0569 -
           10752756-10753164,10753229-10753644,10754149-10755349,
           10756770-10756991,10757615-10757767,10757883-10758034,
           10758142-10758222,10758353-10758598,10759394-10759516
          Length = 1000

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 500 TVTPMQRKLLV--C*GNKHSAISGERMR-IQSLQHPLLRRWQGHISRRIPAYGCSW 658
           T+  ++ ++LV  C G K  A +   +R  QS++    +   G+ +RRI A GCSW
Sbjct: 352 TIDTIEERILVGECEGKKPKAQATSWIRSAQSVRDESDKIKNGYEARRIHALGCSW 407


>01_01_0403 - 3051317-3052120
          Length = 267

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 325 EIQLVLHLYLLNSALFYLQSDFWYTPDPIVFCNF-SSRP 212
           E+Q   H  L  +AL   +++ WY PDP ++  F SS P
Sbjct: 95  ELQRQGHWSLALAALHVARAEPWYRPDPALYATFVSSSP 133


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 291 FRRYKCNTSCISGSFYSKRVHDGLQP 368
           FR Y  N   + G FY  R+ DG+ P
Sbjct: 336 FRHYDVNNEMLHGRFYRDRLGDGVAP 361


>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
          Length = 1369

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 398 DAVPSAIIKGWLETIVDALGVERT--GNTACVAFVPSEFGIILSAVGLLVYSRSNRLLQF 225
           D VP  + K W + +VD   ++ T       +  +  EF + +S+    V+ R++++L  
Sbjct: 702 DIVPENVAKNWFDELVDRSFLQPTVWQGRYVMHDLIREFSVAVSSNEYYVFHRNSKVLPQ 761

Query: 224 FFSSASSKLKGFQIVQW 174
           F +  S     F + QW
Sbjct: 762 FANHISVDNDNFDL-QW 777


>07_01_0886 -
           7356591-7356662,7357002-7357079,7357373-7357444,
           7357511-7357600,7357669-7357783,7358509-7358639,
           7358717-7358992,7360147-7360283,7360368-7360502,
           7360958-7361325,7362111-7362229,7362295-7362339
          Length = 545

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 325 PVRSTPSASTMVSSQPLIMAEGTASPNVTLTP 420
           P R T +  T  + Q L+ AEG  SP  T++P
Sbjct: 105 PTRPTIALLTEEAKQRLLRAEGQTSPGTTVSP 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,092,262
Number of Sequences: 37544
Number of extensions: 435623
Number of successful extensions: 1210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)