Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20992
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 34 0.14
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 34 0.14
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_45793| Best HMM Match : rve (HMM E-Value=0.011) 33 0.24
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 33 0.24
SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 32 0.41
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 1.3
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 30 1.7
SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07) 29 2.9
SB_7449| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38) 29 3.9
SB_19278| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.9
SB_48727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_18969| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-38) 29 3.9
SB_55690| Best HMM Match : AAA (HMM E-Value=0) 29 5.1
SB_20001| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_53551| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_52098| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.7
SB_5362| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-38) 28 6.7
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_30638| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_22679| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 8.9
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 35.1 bits (77), Expect = 0.059
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T A + +T ++ T V+S+ + E TA+P +T P + I LET P
Sbjct: 858 ETTVAPETTVEPETTVASKTTVASETTVTPEATATPELTAGPATTLAPTTIGALETTEAP 917
Query: 475 DY 480
++
Sbjct: 918 EF 919
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T A + +T T +S + + E T + T+TP+ + + E ET V+P
Sbjct: 2806 ESTVAPETTMAPETTVEPETTLSPETTVAPETTVALGTTVTPETTVAPETTEEPETTVVP 2865
Query: 475 D 477
+
Sbjct: 2866 E 2866
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T A++ +T + T V+ + E T + T+TP+ + + E ET V+P
Sbjct: 3146 ETTVASETTAEPDTTQAPETTVTPETTKAPETTVASETTVTPETTVAPETTEEPETTVVP 3205
Query: 475 D 477
+
Sbjct: 3206 E 3206
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T ++ ST ++ T V + ++ E T P T TP+ + + ET V+P
Sbjct: 3414 ETTALPESTVAPESTVASMTTVLPETTVVPETTVVPGTTPTPESTVAPETTVAPETTVIP 3473
Query: 475 D 477
+
Sbjct: 3474 E 3474
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T AT++ +T S T V+ + + E TA+P T+ P+ + ET P
Sbjct: 2331 ESTAATESTVAPETTVSQETTVAPETTVPTETTAAPETTVAPEITFAPETTLPPETTAAP 2390
Query: 475 D 477
D
Sbjct: 2391 D 2391
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T A + +TP+ T +S+ + E T +P VTL P + + ET P
Sbjct: 506 ESTVAPEITVAPETTPALETTSASESTVATESTVAPEVTLPPGTTVAPETTVAPETTAAP 565
Query: 475 D 477
+
Sbjct: 566 E 566
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T AT++ +T S T V+ + + E TA+P T+ P + ET P
Sbjct: 368 ESTAATESTVAPETTVSQETTVAPETTVPTETTAAPETTVAPDITFAPETTVPPETTGAP 427
Query: 475 D 477
D
Sbjct: 428 D 428
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T AT++ +T S T V+ + + E TA+P T+ P + ET P
Sbjct: 1437 ESTAATESTVAPETTVSQETTVAPETTVPTETTAAPETTVAPDITFAPETTVPPETTGAP 1496
Query: 475 D 477
D
Sbjct: 1497 D 1497
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T + P +T + T + + E TA+P+ T+ P+ + + ET V+P
Sbjct: 1871 ETTVVHETTAPPETTVAPETTAAPDTTVAGETTAAPDTTMAPEITVAPETTVAPETTVVP 1930
Query: 475 D 477
+
Sbjct: 1931 E 1931
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T A + +TP+ T +S+ E T +P VTL P + + ET P
Sbjct: 2812 ESTVAPEITVVPETTPALETTSASESTDATESTVAPEVTLPPGTTVAPETTVAPETTAAP 2871
Query: 475 D 477
+
Sbjct: 2872 E 2872
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T + +T + T + + + E TA+P+ T+ P+ + + ET V+P
Sbjct: 2127 ESTVPPETTVATETTVAPETTAAPESTLAPEITAAPDTTMVPESTVAPETTVAPETTVVP 2186
Query: 475 D 477
+
Sbjct: 2187 E 2187
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +1
Query: 301 TNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMPD 477
T A + +T + T V+ + E TA+P T+ P+ + LET ++P+
Sbjct: 2195 TVAQETTVAPETTVAPETTVAPETTAALETTAAPVTTMVPETTAAPATTAALETSIVPE 2253
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T AT++ +T S T V+ + + E TA+P T+ P+ + ET P
Sbjct: 2689 ESTAATESTVAPETTVSQETTVAPETTVPTETTAAPETTVAPEITFAPETTVPPETTAAP 2748
Query: 475 D 477
D
Sbjct: 2749 D 2749
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T AT++ +T S T V+ + + E TA+P TL P+ + + E P
Sbjct: 1729 ESTAATESTVAPETTVSQETTVAPETTVPTETTAAPETTLEPEITVAPETTVAPEITAAP 1788
Query: 475 D 477
D
Sbjct: 1789 D 1789
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T A P ST + + ++ + + T +P T+ P + + + LET V P
Sbjct: 1867 ETTTAPVTTLPPDSTMAPKSTLAPETTAAPDTTLAPETTVAPDTTVAPETTAALETTVAP 1926
Query: 475 DYRQNNRPYSDADAE 519
D PY+ AE
Sbjct: 1927 D--TTAAPYTTVAAE 1939
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T + +T +A T + + ++ E TA+P + TP+ + + S T + P
Sbjct: 2224 ETTMPPETTMAPETTVAAETTAAPETTVVPETTAAPETSATPETTMVPETTSAPSTTMAP 2283
Query: 475 D 477
+
Sbjct: 2284 E 2284
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T A + +T A T V+ + E TA+P T P+ + + +E+ET + P
Sbjct: 602 ETTMAPETTTAPETTAKAETTVAPETSAAPETTAAPETTAAPETTMAPETTAEIETTMTP 661
Query: 475 D 477
+
Sbjct: 662 E 662
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 301 TNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMPD 477
T A + +T ++ T V+S+ E TA+P+ ++ P+ + + ET PD
Sbjct: 748 TAAPETTAEPETTAASETTVASETTAAPETTAAPDTSVAPETTAAPETTAAPETTAAPD 806
>SB_45793| Best HMM Match : rve (HMM E-Value=0.011)
Length = 254
Score = 33.1 bits (72), Expect = 0.24
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 6/141 (4%)
Frame = +1
Query: 280 IMPNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELE 459
I +G++ +++ R++P+ T S +M+ T S L +YK +
Sbjct: 105 IKAKKDGSDLWKSLLEWRNSPTPGTSSSPAQRLMSRRTRS---MLPCSQALYKPEVQAAV 161
Query: 460 TLVMPDYRQNNRPYSDADAEKIIGLLRQQTLG-NIW*ENANSKLTTSATTSVAGT----H 624
T + R+ + Y D A+ + L+ Q + + + ANS S+A T
Sbjct: 162 TEQIIQKRKQAKHYHDRTAKSLPSLVVGQPIRVKVHPQQANSNWKADTVVSMATTPRSYF 221
Query: 625 I*ENSRIWLLLDG-RPGWVHG 684
+ N R + G PGWVHG
Sbjct: 222 VQVNGRTYPRNIGVGPGWVHG 242
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T A P ST + + ++ + + T +P T+ P + + + LET V P
Sbjct: 66 ETTTAPVTTLPPDSTMAPKSTLAPETTAAPDTTLAPETTVAPDTTVAPETTAALETTVAP 125
Query: 475 DYRQNNRPYSDADAE 519
D PY+ AE
Sbjct: 126 D--TTAAPYTTVAAE 138
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T + +T +A T + + ++ E TA+P + TP+ + + S T + P
Sbjct: 411 ETTMPPETTMAPETTVAAETTAAPETTVIPETTAAPETSATPETTMVPETTSAPSTTMAP 470
Query: 475 D 477
+
Sbjct: 471 E 471
>SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 929
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 593 HPLLRRWQGHISRRIPAYGCSW 658
HP R W+ HIS R+ YGC W
Sbjct: 613 HP--RGWRSHISMRVELYGCPW 632
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 292 SEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTL 414
SEGT A + P ST ++ V+S+ + E T+SP++T+
Sbjct: 26 SEGTFAPRTTGPHESTVASGATVASKNTVTPETTSSPDITV 66
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 605 RRWQGHISRRIPAYGCS 655
R W GHIS R+ YGCS
Sbjct: 6640 RTWHGHISMRMELYGCS 6656
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 605 RRWQGHISRRIPAYGCSW 658
R W G IS +I YGC+W
Sbjct: 599 RSWHGPISMKIELYGCNW 616
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 611 WQGHISRRIPAYGC 652
WQGHI+ R+ YGC
Sbjct: 1313 WQGHIAMRVELYGC 1326
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 593 HPLLRRWQGHISRRIPAYGCSWMEDLAGYMGIQCG 697
HP + WQ HI+ R+ YGC + +G+Q G
Sbjct: 5675 HP--KAWQSHIAMRVEFYGCRLGKLCNRPLGLQSG 5707
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 605 RRWQGHISRRIPAYGC 652
R WQ HI+ R+ YGC
Sbjct: 3385 RTWQSHIALRVEVYGC 3400
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 295 EGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMP 474
E T A + +TP+ T +S+ E T +P VTL P + + ET P
Sbjct: 557 ESTVAPEITVVPETTPALETTSASESTDATESTVAPEVTLPPGTTVAPETTVAPETTAAP 616
Query: 475 D 477
+
Sbjct: 617 E 617
>SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07)
Length = 546
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 569 RMRIQSLQHPLLRRWQGHISRRIPA 643
R+R+ ++H L+ WQG +S+ +PA
Sbjct: 104 RLRLLDVRHNKLKTWQGVLSKNLPA 128
>SB_7449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 474 WHYQSFQF*NTFLINQVLRCKRNIW 400
WH+ + QF +T LIN++ C+R W
Sbjct: 93 WHFAALQFSDTRLINKI-ECRRKKW 116
>SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)
Length = 903
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 391 TASPNVTLTPQDLIYKKCISELETLVMPDYRQNNRP 498
T SP VTL P D+I+KK ++ T+ P Y + P
Sbjct: 435 TVSPVVTLEPADIIFKKPVT--VTIPCPVYSGQSNP 468
>SB_19278| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 303
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 593 HPLLRRWQGHISRRIPAYGC 652
HP + W GHIS R+ YGC
Sbjct: 283 HP--QTWHGHISMRVELYGC 300
>SB_48727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 181 TIWKPFNFEEADEKKNCRRRLDLEYTKSPTAD 276
+++K NF + + K+ RR L++EY S +D
Sbjct: 44 SVFKEVNFRDEEVKEKARRCLEIEYMSSEESD 75
>SB_18969| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-38)
Length = 488
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 593 HPLLRRWQGHISRRIPAYGC 652
HP + W GHIS R+ YGC
Sbjct: 308 HP--QTWHGHISMRVELYGC 325
>SB_55690| Best HMM Match : AAA (HMM E-Value=0)
Length = 1031
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 289 NSEGTNATQAVFPVRSTPSAS 351
+ EG N TQA FPV S P+ S
Sbjct: 185 SQEGRNGTQAAFPVTSIPNES 205
>SB_20001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 605 RRWQGHISRRIPAYGC 652
+ W GHIS R+ YGC
Sbjct: 461 KTWHGHISMRVELYGC 476
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 289 NSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETL 465
N T FP+ +T S+M S+QP AE TAS ++T + E T+
Sbjct: 1807 NKACTQVIATTFPLINTTGISSMASAQP-TTAETTASTPTSITSSPSSPSTILPETRTI 1864
>SB_53551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 599 LLRRWQGHISRRIPAYGC 652
+ R W GHIS R YGC
Sbjct: 244 IARTWNGHISLRAELYGC 261
>SB_52098| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 308
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 611 WQGHISRRIPAYGC 652
W GHIS R+ YGC
Sbjct: 31 WHGHISMRVELYGC 44
>SB_5362| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-38)
Length = 199
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 611 WQGHISRRIPAYGC 652
W GHIS R+ YGC
Sbjct: 31 WHGHISMRVELYGC 44
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 216 REEKLQKTIGSGVYQKSDC 272
RE KL K + SG+Y ++DC
Sbjct: 859 RENKLTKVMDSGIYVRTDC 877
>SB_30638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 603 YVGGRDTYLGEFPHMAALGWKTWLG 677
Y+GG + G + H + WKTWLG
Sbjct: 282 YLGGAN---GAYAHAKGVTWKTWLG 303
>SB_22679| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 894
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 605 RRWQGHISRRIPAYGC 652
+ W GHIS R+ YGC
Sbjct: 726 KTWFGHISMRVEVYGC 741
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,504,412
Number of Sequences: 59808
Number of extensions: 516703
Number of successful extensions: 1641
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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