Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20992
         (730 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr...    31   5.6  
AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr...    31   5.6  

>AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17
            protein.
          Length = 4262

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 256  TKSPTADRIMPNSEGTNATQAVFPVRS-TPSASTMVSSQPLIMAEGTASPNVTLTPQD 426
            T +P +  ++ NSE +  T +  PV S TP  ++  +S P   AEGT+ P  T TP +
Sbjct: 986  TSTPVSHTLVANSEAS--TLSTTPVDSNTPLTTSTEASSPPPTAEGTSMP--TSTPSE 1039


>AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17
            protein.
          Length = 4493

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 256  TKSPTADRIMPNSEGTNATQAVFPVRS-TPSASTMVSSQPLIMAEGTASPNVTLTPQD 426
            T +P +  ++ NSE +  T +  PV S TP  ++  +S P   AEGT+ P  T TP +
Sbjct: 986  TSTPVSHTLVANSEAS--TLSTTPVDSNTPLTTSTEASSPPPTAEGTSMP--TSTPSE 1039


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,908,760
Number of Sequences: 237096
Number of extensions: 2384495
Number of successful extensions: 5641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5639
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)