Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20992
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF024496-2|AAB70340.1| 1459|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF016678-1|AAB66151.1|  159|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 256 TKSPTADRIMPNSEGTNATQAVFPVRSTPSASTMVSSQP-LIMAEGTASPNVTLTP 420
           T +PT     P +  T AT       +TP+ +T  +++P       T +P  T TP
Sbjct: 231 TTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTP 286


>Z71265-3|CAA95835.2|  403|Caenorhabditis elegans Hypothetical
           protein M05B5.3 protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +1

Query: 208 EADEKKNCRRRLDLEYTKSPTADRIMPNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAE 387
           E +EKK+C+R  D E   S T   I  ++    A     P  +TP  S   S+ P  +  
Sbjct: 195 EFEEKKSCKRGNDHEQASSETRVSIESDAPPNPAP----PPSTTPETS---STTPSTVTS 247

Query: 388 GTASPN 405
            T+ PN
Sbjct: 248 STSDPN 253


>AF024496-2|AAB70340.1| 1459|Caenorhabditis elegans Hypothetical
           protein ZC178.2 protein.
          Length = 1459

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 286 PNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELET 462
           P+S  TN+  +  P  S    S   S+  +     TA P+ T+T  +     C SE +T
Sbjct: 88  PSSTVTNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTVTNSESSETPCNSETQT 146



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 286 PNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELET 462
           P+S  TN+  +  P  S    S   S+  +     TA P+ T+T        C SE +T
Sbjct: 50  PSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTVTNSASSETPCNSETQT 108



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 286 PNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELET 462
           P+S  TN+  +  P  S    S   S+  +     TA P+ T+T        C SE +T
Sbjct: 392 PSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTVTNSASSETPCNSETQT 450



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 286 PNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELET 462
           P+S  TN+  +  P  S    S   S+  +     TA P+ T+T        C SE +T
Sbjct: 582 PSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTVTNSASSETPCNSETQT 640



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +1

Query: 286 PNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELET 462
           P+S  TN+  +  P  S    S   S+  +     TA P+ T T        C SE +T
Sbjct: 658 PSSTATNSASSETPCNSETQTSDGTSTMTVSSDSTTAGPSSTATNSASSETPCNSETQT 716



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +1

Query: 286 PNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELET 462
           P+S  TN+  +  P  S    S   S+  +     TA P+ T T        C SE +T
Sbjct: 696 PSSTATNSASSETPCNSETQTSDGTSTMTVSSDSTTAGPSSTATNSASSETPCNSETQT 754



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 286  PNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELET 462
            P+S  TN+  +  P  S    S   S+  +     TA P+ T+T        C SE +T
Sbjct: 1000 PSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTVTNSASSETPCNSETQT 1058



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 286  PNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELET 462
            P+S  TN+  +  P  S    S   S+  +     TA P+ T+T        C SE +T
Sbjct: 1106 PSSTATNSASSETPCNSETQTSDGTSTMTVPNDSTTAGPSSTVTNSASSETPCNSETQT 1164


>AF016678-1|AAB66151.1|  159|Caenorhabditis elegans Hypothetical
           protein K07E8.6 protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 609 GGRDTYLGEFPHMAALGWKTWLGTWAFSAAV 701
           G  + +L E PHMAA     WL   A S+A+
Sbjct: 20  GSTEPFLTEHPHMAAEHTVNWLTIAALSSAI 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,355,831
Number of Sequences: 27780
Number of extensions: 387797
Number of successful extensions: 1025
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)