Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20992
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   6.8  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   9.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 606 VGGRDTYLGEFPHMAAL 656
           VGG +T + EFP MA +
Sbjct: 162 VGGTNTGINEFPMMAGI 178


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 134 LFAFILMSFTVCTTI 178
           +FA IL+S ++C T+
Sbjct: 312 IFAMILVSISICVTV 326


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 134 LFAFILMSFTVCTTI 178
           +FA IL+S ++C T+
Sbjct: 312 IFAMILVSISICVTV 326


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 5/20 (25%), Positives = 14/20 (70%)
 Frame = +1

Query: 442 CISELETLVMPDYRQNNRPY 501
           C+ ++ T ++P  ++ N+P+
Sbjct: 77  CVEKVSTTIVPTTQEINKPF 96


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 202 FEEADEKKNCRR 237
           F EAD KK+CR+
Sbjct: 20  FGEADIKKDCRK 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,767
Number of Sequences: 438
Number of extensions: 5202
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)