Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20992
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma mem... 31 0.78
At5g01280.1 68418.m00037 expressed protein 31 1.0
At3g24870.1 68416.m03119 expressed protein 31 1.0
At3g06150.1 68416.m00707 expressed protein 29 3.2
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ... 29 4.2
At3g24880.1 68416.m03120 expressed protein 29 4.2
At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat... 28 5.5
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 28 5.5
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ... 28 5.5
At1g80070.1 68414.m09373 splicing factor, putative strong simila... 28 7.3
At1g74260.1 68414.m08600 AIR synthase-related family protein con... 27 9.6
At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein ... 27 9.6
>At3g21180.1 68416.m02677 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA9)
identical to SP|Q9LU41 Potential calcium-transporting
ATPase 9, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 9) {Arabidopsis thaliana}
Length = 1086
Score = 31.1 bits (67), Expect = 0.78
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 621 TYLGEFPHMAALGWKTWLGT 680
T+LG+F H LGW+ WL +
Sbjct: 1026 TFLGKFAHTVRLGWQLWLAS 1045
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 TKSPTADRIMPNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIY 435
+K+P P S T+ T S+ ++ST S+P + GT + VTLT
Sbjct: 104 SKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRP-SSSSGTGTSRVTLTAARATR 162
Query: 436 KKCISELETL-VMPDYRQNNRPYS 504
++ +T R NNRP S
Sbjct: 163 PTTSTDQQTTGSATSTRSNNRPMS 186
>At3g24870.1 68416.m03119 expressed protein
Length = 1841
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +1
Query: 232 RRRLDLEYTKSPTADRIMPNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVT 411
+R L + + P + +MP+ + + +++P VS QPL M + SPN+
Sbjct: 1409 QRYLQQQQQQFPASGSMMPHVQQPQGSSVSSSSQNSPQTQPPVSPQPLSMPPVSPSPNIN 1468
Query: 412 LTPQ 423
Q
Sbjct: 1469 AMAQ 1472
>At3g06150.1 68416.m00707 expressed protein
Length = 594
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +1
Query: 322 FPVRSTPSASTMVSSQPLIMAEGTASPNVTL--TPQDLIYKK 441
+ VR +PS S +S++P +++E N+TL P++L+ KK
Sbjct: 62 YSVRISPSPSPFMSTKPNLVSEKPHRQNLTLMMAPRNLVPKK 103
>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 706
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 692 TECPCTQPGLPSKSSHMREFS*ICVPATD 606
TECP PG ++ R+F CVP D
Sbjct: 277 TECPFAHPGENARRRDPRKFHYTCVPCPD 305
>At3g24880.1 68416.m03120 expressed protein
Length = 1957
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 265 PTADRIMPNSEGTNATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQ 423
P + +MP+ + + +++P VS QPL M + SPN+ Q
Sbjct: 1536 PASGSMMPHVQQPQGSSVSSSPQNSPQTQPPVSPQPLSMPPVSPSPNINAMAQ 1588
>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
similar to mitogen-activated protein kinase [Arabidopsis
thaliana] gi|1255448|dbj|BAA09057; contains Pfam
PF00069: Protein kinase domain
Length = 773
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 291 FRRYKCNTSCISGSFYSKRVHDGLQPAFNNGRGHSVTKC 407
+RRY+ S IS Y+K++ DGL+ + G H KC
Sbjct: 591 YRRYQIRDSLIS--LYTKQILDGLKYLHHKGFIHRDIKC 627
>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 716
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 692 TECPCTQPGLPSKSSHMREFS*ICVPATD 606
TECP PG ++ R+F CVP D
Sbjct: 281 TECPFVHPGENARRRDPRKFHYSCVPCPD 309
>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
contains Pfam profile: PF01363 FYVE zinc finger
Length = 601
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 255 YQKSDCR*NNAEFRRYKCNTSCISGSFYSKRVHDGLQPAFNNGRGHSVTKCYAY 416
Y+K + + + + Y + S + Y KR G PAF + G V YAY
Sbjct: 198 YEKPSVKFDQSGYDGYNRSRSDLGSDLYGKRSDSGEYPAFEDSYGDGV---YAY 248
>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
to splicing factor Prp8 [Homo sapiens] GI:3661610;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 2382
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -3
Query: 389 PSAIIKGWLETIVDALGVERTGNTACVAFVPSEFGIILSAVGLLVYSRSNRLL 231
P ++ W + I + G+ TG+ CV + ++F + L + +R RL+
Sbjct: 994 PPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLV 1046
>At1g74260.1 68414.m08600 AIR synthase-related family protein
contains Pfam profiles: PF00586 AIR synthase related
protein, N-terminal domain, PF02769 AIR synthase related
protein, C-terminal domain
Length = 1387
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 419 GVSVTFGDAVPSAIIKGWLETIVDALGVERTGNTACVAFVPSEFGIILSAVG 264
G + TFG +PS + WL+ I+ + G+ + +T P E G+++ +G
Sbjct: 468 GYTRTFGMRLPSGDRREWLKPIMFSAGIGQIDHTHITKGEP-EVGMLVVKIG 518
>At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type,
domain; similar to S-locus protein 4 (GI:6069478)
[Brassica rapa]; similar to Pre-mRNA cleavage complex II
protein Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo
sapiens]
Length = 416
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +1
Query: 307 ATQAVFPVRSTPSASTMVSSQPLIMAEGTASPNVTLTPQDLIYKKCISELETLVMPDYRQ 486
A+ + F +R+ S +T +P + G +PN + P L Y+K L +PD+
Sbjct: 92 ASNSSFALRNNDS-NTNNYQKPFVAGYG--NPNPQIVPLPLPYRKLDDNLSLDSLPDWVP 148
Query: 487 NNR 495
N+R
Sbjct: 149 NSR 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,207,964
Number of Sequences: 28952
Number of extensions: 351358
Number of successful extensions: 1000
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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