Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20991
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 113 2e-26
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 33 0.037
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 28 1.0
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.8
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 1.8
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 1.8
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.8
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.4
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 3.2
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 4.2
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 4.2
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 26 5.6
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 26 5.6
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 26 5.6
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 5.6
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.4
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 113 bits (273), Expect = 2e-26
Identities = 53/94 (56%), Positives = 70/94 (74%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 408
GK ++++ +++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP A
Sbjct: 54 GKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNA 113
Query: 409 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
IAPL V +PA NTG+ P KTSFFQAL IPTKI+R
Sbjct: 114 IAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITR 147
Score = 70.1 bits (164), Expect = 3e-13
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = +3
Query: 492 PYQNFKGTIEIINDVHILKPGDKVRASEATLLNMLNISPFSYGLVVKQVYDSGTIFA 662
P + +GTIEI +DVH++ KV SEATLLNMLNISPF+YG+ V +YD G +F+
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFS 198
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +2
Query: 92 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRNSLRGSSIVLMGKNTMMRKASK 262
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 33.1 bits (72), Expect = 0.037
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 259 KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIP 435
++H +N L KLL G VG +FT EV E+ VQ AR GA+AP + VIP
Sbjct: 83 EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIP 138
Query: 436 A 438
A
Sbjct: 139 A 139
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 190 LLHLLRAHVIGTHDETFWVLVQELD---DLNEVVRLPSSLV 77
L+H L +V G HD +FW L ++L D +++ P S V
Sbjct: 200 LIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYV 240
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 190 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 65
+LH L + G D V++ +L E + P ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 190 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 65
+LH L + G D V++ +L E + P ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 190 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 65
+LH L + G D V++ +L E + P ++ PTH
Sbjct: 256 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 297
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 190 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 65
+LH L + G D V++ +L E + P ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 365 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 267
L +T +S + PTLP + + S +G+LSR
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSR 67
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 3.2
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = +2
Query: 158 ADNVGSQQMQQIRNSLRGSSIVLMGKNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSP 337
A + GS+ Q+ + S++ L + R ASK T+TT S ++ L+
Sbjct: 724 ATDRGSRLYQRTKGSVKSRESRLKKEKHKNRPASKGTYTTYTSSEERQRSTEDPLSH--- 780
Query: 338 AETSLRSVTNCWRTKSRLQLVPVP 409
+T R++ N K + +P+P
Sbjct: 781 -DTLSRTILNDQIVKGNVTEIPLP 803
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.2
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 461 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 291
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 290 SRAGL 276
S L
Sbjct: 195 SEEEL 199
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 523 SSTMYTS*SPVTRFELLKPPFST 591
+STMY S P + + KPP+ T
Sbjct: 90 ASTMYASPPPSSNYNTAKPPYQT 112
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +2
Query: 254 ASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSF 433
+S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 517 SSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTI 575
Query: 434 PPTTPAS 454
+TP +
Sbjct: 576 SSSTPVT 582
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 176 QQMQQIRNSLRGSSIV-LMGKNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSPAETSL 352
+Q+Q+ +S S I L GK ++ + +S T IQPS + + +A PA T++
Sbjct: 504 RQIQKAESSEDTSEIESLQGKLSLPQVSS--TQQEIQPSSSVPEAASNEIAEKEPAVTAI 561
Query: 353 RSVT 364
S+T
Sbjct: 562 ESIT 565
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -2
Query: 199 VTDLLHLLRAHVIGTHDETF-WVLV 128
+ DLL +L+ + THDE+ W++V
Sbjct: 336 IGDLLSMLKEQITHTHDESLEWIVV 360
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -2
Query: 643 SYTCLTTRPYENGEMFNMLRRVASEARTLSPGFKMCTSLMISIVPLK--FW*GWKELGRK 470
SY+ T PY + ++++ S + G L+IS+ P++ FW G L
Sbjct: 268 SYSSGETNPYFSRLYYSIILTFVSVIAAFTIGIIQMLMLIISVHPMESTFWNGLNRLS-D 326
Query: 469 RFSLDRGRCCG 437
+ + G CG
Sbjct: 327 NYEIVGGCICG 337
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 231 PMSTILEPRSELRICCICCEPTLS 160
P T LEP +R CC C +PT+S
Sbjct: 301 PPKTELEPIRSMRWCC-CEDPTVS 323
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = -1
Query: 524 DFNSTLEILVGMERAWKKEVF-SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSL-SRTS 351
D + E +G + +W F S P+P G+T D+ + PG+ +++F + ++
Sbjct: 670 DVEPSTEQNIGGDVSWGASTFQSKPQPSFSFGLTLDDKSNTPGK--NFSIFGKTAETQVE 727
Query: 350 TRSPRVN--TKP 321
+ P N TKP
Sbjct: 728 QKKPENNVLTKP 739
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 410 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQGYY 517
L HC + P A Q KPL S+ + SL KF+ ++
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFH 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,226
Number of Sequences: 5004
Number of extensions: 66300
Number of successful extensions: 215
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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