Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20991
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        138   4e-33
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)          31   1.1  
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          29   2.6  
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 29   2.6  
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)                       29   3.4  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   3.4  
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        29   4.5  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 28   5.9  
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)               28   5.9  
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  138 bits (334), Expect = 4e-33
 Identities = 63/94 (67%), Positives = 77/94 (81%)
 Frame = +1

Query: 229 GKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 408
           GK     ++I+ HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR  ++ENKV APA+ G 
Sbjct: 38  GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGV 97

Query: 409 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
           IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI+R
Sbjct: 98  IAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIAR 131



 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 35/46 (76%), Positives = 38/46 (82%)
 Frame = +2

Query: 119 QLLDEYPKCFIVGADNVGSQQMQQIRNSLRGSSIVLMGKNTMMRKA 256
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKA
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKA 46



 Score = 34.7 bits (76), Expect = 0.068
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +3

Query: 492 PYQNFKGTIEIINDVHILKPGDKVRA 569
           P +  +GTIEIINDVH++K  +K++A
Sbjct: 126 PTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1332

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +2

Query: 251 KASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSS 430
           KA  +TWT  + +RN   T ++ L   +P    L    N     +  Q +PV + +C+++
Sbjct: 93  KARSSTWTRTRNARNLIDTQQSQLEMNNPQH--LHRTYNFSMMNNVRQPIPVLVNNCRAN 150

Query: 431 FPPTTPASVQRKPLSSKLFP 490
                  S ++   SS L P
Sbjct: 151 DKLVESQSKRKSARSSNLIP 170


>SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)
          Length = 230

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 613 ENGEMFNMLRRVASEARTLSPGFKMCTSLMISIVPLKFW 497
           +N E  + LRRV +E+ T  P    CTSLM +I  +K W
Sbjct: 90  KNAETIDALRRVIAESYTPRP----CTSLMNAIFDIKEW 124


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +2

Query: 332 SPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQ 508
           S + TS  ++   WR K    L  + L    SS P +TPAS+     ++ L PSL   Q
Sbjct: 561 SLSPTSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQ 618


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 572 RSSNLVTGLQDVYIVDDFNSTLEI 501
           R  NLVT L DVYI  ++ S L+I
Sbjct: 295 RDKNLVTNLSDVYIGSNYRSILDI 318


>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
          Length = 853

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -1

Query: 599 VQHVEKGGFRSSNLVTGLQDVYIVDDFNSTLEILVGMERAWKKEVF 462
           V++ EK GF   +L+  L D+Y+  + +     +   +R+++KE+F
Sbjct: 719 VKNPEKYGFEPKSLLDRLTDIYVHLNTDEFATAVASDQRSYRKELF 764


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 440 WAGMTTDNGAMAPGRAGAWTLFSNSL 363
           W+  T D     PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 486 KSLEERGFLWTEAGVVGGNDD*QWG 412
           K+LEERG L+  +GV GG +  ++G
Sbjct: 160 KALEERGLLFVGSGVSGGEEGARYG 184


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 254 ASKTTWTTIQPSRNCCHTSRATLASCSPA 340
           A ++ WT   P   C H  ++  A C PA
Sbjct: 16  AGESNWTRCSPVCKCAHIDKSMAAVCRPA 44


>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 359 VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASV 457
           V +C R        PVP PH ++S  PT P SV
Sbjct: 2   VVSCPRLFLDPMPAPVPRPHARASASPTHPTSV 34


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 250 QSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 348
           + +K HLDN P L K LP + G +  + + GDL
Sbjct: 174 KELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205


>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
          Length = 509

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 377 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 267
           FS+S + T         KP    +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500


>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 371 WRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS 493
           +RT+SR+ L    LP+   + PP+  TP  +   PLS    PS
Sbjct: 68  YRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPS 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,607,681
Number of Sequences: 59808
Number of extensions: 534669
Number of successful extensions: 1699
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1698
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)