Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20990
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   163   2e-41
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    27   2.2  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    27   2.2  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    26   5.2  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   5.2  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   6.8  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   6.8  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   9.0  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   9.0  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  163 bits (396), Expect = 2e-41
 Identities = 87/170 (51%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
 Frame = +1

Query: 259 RDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVF 438
           RD T+DQ+T+D+A AILK++VGIKCATITPDE RV+E+ LKKMW SPNGTIRNIL GTVF
Sbjct: 59  RDKTNDQITVDAAKAILKNDVGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVF 118

Query: 439 REPILCQSIPRVVPGWTKPIVIGLMRTATNTRRKILLYRNPERLNL-FTLHEMVRQRGVY 615
           REPIL ++IP+ +PGWT PI IG        +   L+   P +L L FT       +  Y
Sbjct: 119 REPILIKNIPKYIPGWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETY 178

Query: 616 YMI-LKLRALLWACTIPTNRFGPLPIPVFQVALQKKWPLYLSTKNTILKR 762
            +       +  +     +         FQ+ALQKK PLYLSTKNTILK+
Sbjct: 179 NVYEFNGSGVAMSMYNTDDSIRGFAHSSFQMALQKKMPLYLSTKNTILKK 228



 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
 Frame = +3

Query: 498 CDRPHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRV--LYDFKTPGVAMGMYNTDES 671
           C   HA GDQYK+ D V   PGK+EL +T +   + +    +Y+F   GVAM MYNTD+S
Sbjct: 139 CIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDS 198

Query: 672 IRSFAHSSFSGSFTEKM 722
           IR FAHSSF  +  +KM
Sbjct: 199 IRGFAHSSFQMALQKKM 215



 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 22/45 (48%), Positives = 34/45 (75%)
 Frame = +2

Query: 119 KRVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGL 253
           +++    PVVEMDGDEMTR++W  I+E+L+ PY+ +   Y+DLG+
Sbjct: 12  QKITVKNPVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGI 56


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 613 YYMILKLRALLWACTIPTN-RFGPLPIPV-FQVALQKKWPLYLSTKNT 750
           Y+  LK   +LW      N  F PL + V F  A+   W  YLS KN+
Sbjct: 168 YWPTLKANYILWPAVQLFNFTFVPLVLQVIFANAVSMVWTAYLSLKNS 215


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 271 DDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWL 393
           DD VT   + AIL+H V     +  P E+ V E +  ++W+
Sbjct: 56  DDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWM 96


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 341 IVAHLMPTLCFRMACAESMVT*SSVASRCGGPSQSKDNPP*HMEISVSL 195
           +V+ L P+ C  ++    + T SS+ S C  PS     P  H E  V++
Sbjct: 290 LVSQLPPSPCLTVSSGP-LSTASSIPSNCSCPSVKSSGPSYHAEQEVNV 337


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 709 KLPEKLEWAKDRIDSSVLYMPIATPGVLKSYNTR 608
           K  EK EW K++ID   L   I T   LK+Y  R
Sbjct: 300 KATEKREWVKEKIDLESLLGTIQTN--LKTYQLR 331


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 573 VQPFRVSVQ-QNLAPCIGRRAHEAYHNRFRPTRHNPRDTLTQYRFA 439
           V+P  +S Q QNL+P   R AH     R+   R N  D + + R A
Sbjct: 410 VEPVGLSTQEQNLSPLSKRSAHNMIEKRY---RSNLNDKIAELRDA 452


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +2

Query: 110 GTAKRVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLRIVTPLMIRSPS 289
           GT  + +++ P      ++  +++  ++++ L+FP  + D L    G+R   PL +R PS
Sbjct: 355 GTTDKPLSSVPTNPTPSEDDIQLILKELQKYLVFPVDREDVLSAWCGIR---PL-VRDPS 410

Query: 290 T 292
           T
Sbjct: 411 T 411


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 35  RNMANTSTTKILKCVNQFASLTRNYGTAKRVVAAKPVVEMDGDEMTRIMWAKIKERL 205
           R + N S+++I         L +  GT + ++AAK +VE  GD +  I   K K ++
Sbjct: 516 RELLNLSSSEISNGKKTSTPLVKVCGT-RSLLAAKTIVESGGDLIGLIFVEKSKRKV 571


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 425 PKMLRIVPFGLSHIFFNLNSSTLCSSGVIVAHLMPTLCFRM 303
           P  L ++  GLSH F N+ + TL S    VA+ + +L  R+
Sbjct: 223 PVFLNLIYNGLSHFFQNILAFTLLSIISPVAYSIASLIKRI 263


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 216 YGNISLSLILAHMMRVISSPS 154
           YGNI+L LI A + R I SP+
Sbjct: 201 YGNITLGLIRALLAREILSPA 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,341,124
Number of Sequences: 5004
Number of extensions: 70700
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)