Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20990
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 167 1e-41
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 166 1e-41
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 145 4e-35
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 100 1e-21
04_01_0175 - 1972361-1972429,1973185-1973334,1974956-1975105,197... 28 7.1
07_01_0884 + 7349384-7349740 28 9.4
05_05_0377 - 24498664-24500215,24500306-24500643 28 9.4
02_02_0036 + 6258106-6258214,6258999-6259159 28 9.4
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 167 bits (405), Expect = 1e-41
Identities = 83/169 (49%), Positives = 106/169 (62%)
Frame = +1
Query: 256 HRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTV 435
HRDATDD+VT+++A A LK+NV IKCATITPDE RV+EF LK+MW SPNGTIRNI+ GTV
Sbjct: 50 HRDATDDKVTVEAAEATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTV 109
Query: 436 FREPILCQSIPRVVPGWTKPIVIGLMRTATNTRRKILLYRNPERLNLFTLHEMVRQRGVY 615
FREPI+C+++PR+VPGWTKPI IG R + + P +L L + +
Sbjct: 110 FREPIICKNVPRLVPGWTKPICIGRHAFGDQYRATDAVLKGPGKLKLVFEGKDEQIDLEV 169
Query: 616 YMILKLRALLWACTIPTNRFGPLPIPVFQVALQKKWPLYLSTKNTILKR 762
+ + + A +KKWPLYLSTKNTILK+
Sbjct: 170 FNFTGAGGVALSMYNTDESIRAFAEASMTTAYEKKWPLYLSTKNTILKK 218
Score = 68.5 bits (160), Expect = 5e-12
Identities = 33/74 (44%), Positives = 47/74 (63%)
Frame = +3
Query: 498 CDRPHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIR 677
C HA GDQY+A D V+ PGK++LV+ +D + V GVA+ MYNTDESIR
Sbjct: 131 CIGRHAFGDQYRATDAVLKGPGKLKLVFEGKDEQIDLEVFNFTGAGGVALSMYNTDESIR 190
Query: 678 SFAHSSFSGSFTEK 719
+FA +S + ++ +K
Sbjct: 191 AFAEASMTTAYEKK 204
Score = 65.3 bits (152), Expect = 5e-11
Identities = 25/45 (55%), Positives = 36/45 (80%)
Frame = +2
Query: 119 KRVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGL 253
+++ A P+VEMDGDEMTRI W IK++LIFP++ +D Y+DLG+
Sbjct: 4 EKIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGV 48
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 166 bits (404), Expect = 1e-41
Identities = 84/170 (49%), Positives = 104/170 (61%)
Frame = +1
Query: 253 PHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGT 432
P+RD TDD+VT+++A A LK+NV IKCATITPDE RV+EF LK MW SPNGTIRNIL GT
Sbjct: 49 PYRDQTDDKVTVEAAEATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNGTIRNILNGT 108
Query: 433 VFREPILCQSIPRVVPGWTKPIVIGLMRTATNTRRKILLYRNPERLNLFTLHEMVRQRGV 612
VFREPI+C++IPR+VPGWTKPI IG R + + P +L L +
Sbjct: 109 VFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVYEGKDEEIELE 168
Query: 613 YYMILKLRALLWACTIPTNRFGPLPIPVFQVALQKKWPLYLSTKNTILKR 762
+ + + A +KKWPLYLSTKNTILK+
Sbjct: 169 VFNFTGAGGVAQSMYNTDESIRSFAEASMATAYEKKWPLYLSTKNTILKK 218
Score = 72.5 bits (170), Expect = 3e-13
Identities = 36/74 (48%), Positives = 46/74 (62%)
Frame = +3
Query: 498 CDRPHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIR 677
C HA GDQY+A D V+ PGK++LVY +D E V GVA MYNTDESIR
Sbjct: 131 CIGRHAFGDQYRATDAVIKGPGKLKLVYEGKDEEIELEVFNFTGAGGVAQSMYNTDESIR 190
Query: 678 SFAHSSFSGSFTEK 719
SFA +S + ++ +K
Sbjct: 191 SFAEASMATAYEKK 204
Score = 67.7 bits (158), Expect = 1e-11
Identities = 26/44 (59%), Positives = 36/44 (81%)
Frame = +2
Query: 122 RVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGL 253
++ A P+VEMDGDEMTR+ W IK++LIFP++++D YFDLGL
Sbjct: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGL 48
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 145 bits (351), Expect = 4e-35
Identities = 87/189 (46%), Positives = 106/189 (56%), Gaps = 19/189 (10%)
Frame = +1
Query: 253 PHRDATDDQVTIDSAHAILKHNVGIKCATITP------------------DEQRVEEFKL 378
P+RDAT D+VTI+SA A LK+NV IKCATITP DE RV+EF L
Sbjct: 74 PNRDATGDKVTIESAEATLKYNVAIKCATITPVLDTQFKFDFGRTIHEPTDEGRVKEFNL 133
Query: 379 KKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGLMRTATNTRRKILLYRN 558
MW SPNGTIRNIL GTVFREPI+C++IPR+VPGW KPI IG R + +
Sbjct: 134 SAMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWIKPICIGRHAFGDQYRATDTVIKG 193
Query: 559 PERLNL-FTLHEMVRQRGVYYMILKLRALLWACTIPTNRFGPLPIPVFQVALQKKWPLYL 735
P +L L F E + V + + + +A QK+WPLYL
Sbjct: 194 PGKLKLVFDGREEQIELDV-FNFTGAGGVALSMYNTDESIWAFAEASMNMAYQKRWPLYL 252
Query: 736 STKNTILKR 762
STKNTILK+
Sbjct: 253 STKNTILKK 261
Score = 64.9 bits (151), Expect = 7e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Frame = +3
Query: 480 WLDETYCDRPHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYN 659
W+ + C HA GDQY+A D V+ PGK++LV+ R+ E V GVA+ MYN
Sbjct: 169 WI-KPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFTGAGGVALSMYN 227
Query: 660 TDESIRSFAHSSFSGSFTEK 719
TDESI +FA +S + ++ ++
Sbjct: 228 TDESIWAFAEASMNMAYQKR 247
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +2
Query: 143 VVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGL 253
V GDEMTR++W IK++LIFP++ +D Y+DLGL
Sbjct: 37 VTRNSGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGL 73
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 100 bits (240), Expect = 1e-21
Identities = 50/87 (57%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Frame = +1
Query: 256 HRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTV 435
+RDATDD+VT++SA A L T+T DE RV+EFKLK MW SPNGTIRNIL GTV
Sbjct: 119 NRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFKLKSMWRSPNGTIRNILNGTV 177
Query: 436 FREPILCQSIPRV--VPGWTKPIVIGL 510
FREPILC+++PR+ VP +P+ + +
Sbjct: 178 FREPILCKNVPRILSVPDGAEPVELNV 204
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/35 (57%), Positives = 28/35 (80%)
Frame = +3
Query: 615 LYDFKTPGVAMGMYNTDESIRSFAHSSFSGSFTEK 719
+Y+FK PGVA+ MYN DESIR+FA SS + + ++K
Sbjct: 204 VYNFKGPGVALSMYNVDESIRAFAESSMAMALSKK 238
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 703 VALQKKWPLYLSTKNTILKR 762
+AL KKWPLYLSTKNTILK+
Sbjct: 233 MALSKKWPLYLSTKNTILKK 252
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 203 LIFPYVKVDCLYFDLGL 253
LIFPY+++D YFDLGL
Sbjct: 101 LIFPYLELDVKYFDLGL 117
>04_01_0175 -
1972361-1972429,1973185-1973334,1974956-1975105,
1975370-1975417,1975717-1975793,1975897-1975999,
1977103-1977233,1978793-1978970,1980656-1980676,
1981233-1981290,1981381-1981444,1982261-1982431,
1982526-1982637,1982779-1983021,1983783-1983964,
1984785-1984920
Length = 630
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 646 WACTIPTNRFGPLPIPVFQVALQK 717
W + GPLPIPV Q +LQK
Sbjct: 523 WGDRVHARGVGPLPIPVDQFSLQK 546
>07_01_0884 + 7349384-7349740
Length = 118
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 448 ILCQSIPRVVPGWTKPIVIGLMRTATNTRRKILLY 552
ILC+ P VVP + P+++ TA R + +Y
Sbjct: 70 ILCRDDPTVVPRYVLPLLVMCCATAEVVRNYVQMY 104
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 401 FGLSHIFFNLNSSTLCSSGVIVAHLMPTLCF 309
+ S +F LN + +C + L+PT+C+
Sbjct: 343 YASSECYFGLNLNPMCKPSEVAYTLIPTMCY 373
>02_02_0036 + 6258106-6258214,6258999-6259159
Length = 89
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 472 VVPGWTK--PIVIGLMRTATNTRRKILLYRNP 561
+V W K P+ + ATN R+IL YRNP
Sbjct: 45 IVINWEKKHPVRRLFLGLATNRHRRILFYRNP 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,719,731
Number of Sequences: 37544
Number of extensions: 463982
Number of successful extensions: 1039
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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