Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20990
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                     168   4e-42
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)               144   5e-35
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)                     33   0.19 
SB_6680| Best HMM Match : Astacin (HMM E-Value=0)                      32   0.44 
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         32   0.59 
SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)           30   2.4  
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_18045| Best HMM Match : rve (HMM E-Value=0.25)                      30   2.4  
SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)                   28   9.5  

>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score =  168 bits (409), Expect = 4e-42
 Identities = 85/170 (50%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
 Frame = +1

Query: 256 HRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTV 435
           HRDAT+D+VT+++A AI KH+VGIKCATITPDE RVEEFKLKKMW SPNGTIRNILGGTV
Sbjct: 38  HRDATNDKVTVEAAEAIRKHHVGIKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTV 97

Query: 436 FREPILCQSIPRVVPGWTKPIVIGLMRTATNTRRKILLYRNPERLNL-FTLHEMVRQRGV 612
           FR PI+C+++PR+VPGW KPIVIG        R +      P    + FT     +    
Sbjct: 98  FRAPIICKTVPRLVPGWEKPIVIGRHAFGDQYRARDFAVNGPGSFEISFTPESGGKLTTE 157

Query: 613 YYMILKLRALLWACTIPTNRFGPLPIPVFQVALQKKWPLYLSTKNTILKR 762
            +       ++                  Q A+ K+ PLY+STKNTILK+
Sbjct: 158 VFEFTGTGGVMMGMYNTDEAIRDFAHSCMQYAIHKQVPLYMSTKNTILKK 207



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
 Frame = +3

Query: 510 HAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFK-TPGVAMGMYNTDESIRSFA 686
           HA GDQY+A+DF V  PG  E+ +T   G      +++F  T GV MGMYNTDE+IR FA
Sbjct: 123 HAFGDQYRARDFAVNGPGSFEISFTPESGGKLTTEVFEFTGTGGVMMGMYNTDEAIRDFA 182

Query: 687 HS 692
           HS
Sbjct: 183 HS 184


>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
          Length = 296

 Score =  144 bits (350), Expect = 5e-35
 Identities = 66/84 (78%), Positives = 77/84 (91%)
 Frame = +1

Query: 256 HRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTV 435
           +RDAT+DQVTID+A AI + +VGIKCATITPDE+RVEEFKLKKMW SPNGTIRNILGGTV
Sbjct: 12  NRDATNDQVTIDAAAAIKQCHVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTV 71

Query: 436 FREPILCQSIPRVVPGWTKPIVIG 507
           FRE I+C++IPR+V  WTKPI+IG
Sbjct: 72  FREAIICKNIPRLVSPWTKPIIIG 95



 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 42/72 (58%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
 Frame = +3

Query: 510 HAHGDQYKAQDFVVPKPGKVELVYTTRDGTTE-RRVLYDFKT-PGVAMGMYNTDESIRSF 683
           HAH DQYKA DFVVP PGKVE+VY+  DG    +  + +FK   GV MGM+NTD SIR+F
Sbjct: 97  HAHADQYKATDFVVPGPGKVEIVYSPADGGEPIKYTVNEFKDGGGVTMGMFNTDVSIRAF 156

Query: 684 AHSSFSGSFTEK 719
           AHSSF  +  +K
Sbjct: 157 AHSSFQYALDKK 168


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 528 YKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFK-TPGVAMGMYNTDESIRSFAHSSFSG 704
           +K ++  VP+      +  TRDG T   V      TPG A G+ + ++++ S    +F+ 
Sbjct: 193 FKVKELTVPEDAGTADLPVTRDGDTSTTVTISVTYTPGTATGL-DYEDTVTSI---TFAP 248

Query: 705 SFTEKMASIPVYEEYHFET 761
             TEK   +P+ ++   E+
Sbjct: 249 GDTEKFIQVPIVDDQLVES 267


>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 1958

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 528  YKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFK-TPGVAMGMYNTDESIRSFAHSSFSG 704
            +K ++  VP+      +  TRDG T   V      TPG A G+ + ++++ S    +F+ 
Sbjct: 1520 FKVKELTVPEDAGTADLPVTRDGDTSTTVTISVTYTPGTATGL-DYEDTVTSI---TFAP 1575

Query: 705  SFTEKMASIPVYEEYHFET 761
              TEK   +P+ ++   E+
Sbjct: 1576 GDTEKFIQVPIVDDQLVES 1594


>SB_6680| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 637

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 364 EEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGLMRTATNTRRKI 543
           E ++ K++ L P G +  ++G  + R P   + I + + GW +   I      T T   +
Sbjct: 76  EPWERKQVQLWPGGVVPYLIGEDLKRRPSFVKKIEQAMEGWERRTCIKFKERTTET-DYV 134

Query: 544 LLYRNP 561
           +LY  P
Sbjct: 135 MLYFGP 140


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = +3

Query: 528 YKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAHSSFSGS 707
           YKA+D  +PK     L   TR+G  + R  Y  + P    G +N  + I S     F  +
Sbjct: 95  YKAEDCSIPKREAPVLYGVTREGLCDLRYYYCKRFPLTGKGFFNNRKLICSVRQILFRNN 154

Query: 708 FTEKMASIPVYEEYHFETY 764
               +       +  F++Y
Sbjct: 155 SKVSLKKHAFLSKASFQSY 173


>SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)
          Length = 1879

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 25/90 (27%), Positives = 39/90 (43%)
 Frame = +3

Query: 354 TKSRRVQVEENVAKPERNDP*HFGRYSIPRTDIVSEYPEGCAWLDETYCDRPHAHGDQYK 533
           TKS +   + +  KPE  D  H     +   D++ E+PE CA + E     P        
Sbjct: 280 TKSEKKYKKTSFLKPEILDLPH-----VSSNDVLDEFPEDCAKIQEVGLFTPQEKVVTLA 334

Query: 534 AQDFVVPKPGKVELVYTTRDGTTERRVLYD 623
             + VVPK  + E   TT   T  +R +++
Sbjct: 335 NSNKVVPKYPEEET--TTEVETRTKRKMHE 362


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +1

Query: 256 HRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTV 435
           HRD   D + +     +   + G  CATITP++ +         W++P    R   G  V
Sbjct: 339 HRDIKSDNILLGMDGQVKLTDFGF-CATITPEQNKRSTMVGTPYWMAPEVVTRKQYGPRV 397


>SB_18045| Best HMM Match : rve (HMM E-Value=0.25)
          Length = 364

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 83  QFASLTRNYGTAKRVVAAKPVVEMDGDEM 169
           Q   +TRN    K+V+   PV+E+D DE+
Sbjct: 285 QGKGITRNSSVFKKVILGTPVIEIDDDEI 313


>SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 526 NTRRKILLYRNPERLNLFTLHEMVRQRGVYYMI 624
           N  R+ LL +     N+  L+E ++QRGVY ++
Sbjct: 60  NILREALLLKRAHHPNIVKLYETLKQRGVYCLV 92


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 576 QVQPFRVSVQQNLAPCIGRRAHEAYHNRFRPTRHNPRDTLTQY 448
           +V+  R   Q  L+PC+G+     YH  F  TR N  D  T Y
Sbjct: 562 RVRNIRTDWQGLLSPCVGKTQWGEYHTIF--TRINMTDADTSY 602


>SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -1

Query: 555 SVQQNLAPCIGRRAHEAYHNRFRPTRHNPRDTLTQYRFAEYCTAQNVTDRSVRA*PHFL 379
           +++++L    G   H  Y N++R    N +DT  +  F    + +  TDR V   P  L
Sbjct: 216 NIEEDLYKLFGDAGHR-YKNKYRSLAFNLKDTRNKVLFHHVLSGEVSTDRLVAMTPEQL 273


>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
          Length = 448

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 491 FVQPGTTLGIL*HNIGSRNTVPP-KMLRIVPFGLSHIFFNLNSS 363
           F  P T L +  +NIGS NT+   ++ R VP G+ H  + +N++
Sbjct: 38  FCHPATCLTVFRYNIGSLNTLKQLRIWREVPSGV-HKRYEMNAT 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,629,455
Number of Sequences: 59808
Number of extensions: 559163
Number of successful extensions: 1153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)